allele.counts: This counts the number of alleles at a locus.
In fsthet: Fst-Heterozygosity Smoothed Quantiles

This counts the number of times each allele occurs at a locus from a list of genotypes (the sum of all the counts is 2*number of individuals).

1	allele.counts(genotypes)

genotypes

A list of genotypes.

AlleleCounts

The number of times each allele is recorded at the locus.

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  #create a random sample of genotypes
  genotypes<-sample(c("0101","0102","0202"),50,replace=TRUE)
  counts<-allele.counts(genotypes)

fsthet documentation built on May 2, 2019, 7:55 a.m.

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