fsthet: This is a wrapper to generate and plot the smoothed quantiles...

In fsthet: Fst-Heterozygosity Smoothed Quantiles

Description

This calcualtes global Fsts from a genepop dataframe and then does: calculates smoothed quantiles plots the Heterozygosity-Fst relationship with smoothed quantiles outputs the loci lying outside the quantiles. Returns a data frame containing Locus ID, Ht, Fst, and a true/false value of whether it's an outlier.

Usage

	fsthet(gpop, fst.choice="fst", alpha=0.05)

Arguments

gpop	Provide the genepop dataframe (from my.read.genepop).
fst.choice	Specify which type of fst calculation should be used. See fst.options.print for the choices.
alpha	The alpha value for the quantiles (default is 0.05 to generate 95 percent quantiles).

Value

fsts	This returns a dataframe with Locus, Ht, Fst, and True/False of whether it's an outlier.

Examples

  
## Not run: 
  gfile<-system.file("extdata", "example.genepop.txt",package = 'fsthet')
  gpop<-my.read.gpop(gfile)
  out.dat<-fsthet(gpop)

## End(Not run)

fsthet documentation built on May 2, 2019, 7:55 a.m.