calibrate_gmean_bymot: Modelling of performances by assembly motif

In functClust: Functional Clustering of Redundant Components of a System

Description

Take a vector fobs of assembly performances and return a vector of performances predicted as the geometric mean of performances of all assemblages that share the same assembly motif.

Assembly motifs are labelled in the vector assMotif.

Usage

calibrate_gmean_bymot(fobs, assMotif)

Arguments

fobs	a numeric vector. The vector fobs contains the quantitative performances of assemblages.
assMotif	a vector of labels of length(fobs). The vector assMotif contains the assembly motifs of assemblages.

Details

Modelled performances are computed using arithmetic mean (opt.mean = "amean") of performances of assemblages that share a same assembly motif (opt.model = "bymot") by including all assemblages that belong to a same assembly motif.

Value

Return a vector of length(fobs). Its values are computed as the geometric mean of performances of assemblages that share a same assembly motif.

See Also

calibrate_amean_bymot arithmetic mean by assembly motif.
calibrate_amean_byelt arithmetic mean by elements occurring within assembly motif.
calibrate_gmean_bymot geometric mean by assembly motif.
calibrate_gmean_byelt geometric mean by elements occurring within assembly motif.

functClust documentation built on Dec. 2, 2020, 5:06 p.m.