gMCP: Graph Based Multiple Comparison Procedures

Functions and a graphical user interface for graphical described multiple test procedures.

AuthorKornelius Rohmeyer [aut, cre], Florian Klinglmueller [aut]
Date of publication2015-08-31 14:30:03
MaintainerKornelius Rohmeyer <rohmeyer@small-projects.de>
LicenseGPL (>= 2)
Version0.8-10
http://gsrmtp.r-forge.r-project.org/

View on CRAN

Man pages

bdiagNA: Create a Block Diagonal Matrix with NA outside the diagonal

bonferroni.test: Weighted Bonferroni-test

bonferroni.trimmed.simes.test: Trimmed Simes test for intersections of two hypotheses and...

calcPower: Calculate power values

confint: Simultaneous confidence intervals for sequentially rejective...

corMatWizard: Graphical User Interface for the creation of correlation...

doInterim: EXPERIMENTAL: Evaluate conditional errors at interim for a...

entangled: Class entangledMCP

exampleGraphs: Functions that create different example graphs

extractPower: Calculate power values

generateBounds: generateBounds

generatePvals: generatePvals

generateTest: generateTest

generateWeights: generateWeights

getJavaInfo: Get Memory and Runtime Info from JVM

gMCP: Graph based Multiple Comparison Procedures

gMCP.extended: Graph based Multiple Comparison Procedures

gMCP-package: Graphical described Multiple Comparison Procedures

gMCPReport: Automatic Generation of gMCP Reports

gMCPResult: Class gMCPResult

gPADInterim: Class gPADInterim

graph2latex: Graph2LaTeX

graphAnalysis: Analysis of a gMCP-Graph

graphGUI: Graphical User Interface for graphical described multiple...

graphMCP: Class graphMCP

graphTest: Multiple testing using graphs

hydroquinone: Hydroquinone Mutagenicity Assay

joinGraphs: Joins two graphMCP objects

matrix2graph: Matrix2Graph and Graph2Matrix

parametric.test: Weighted parametric test

placeNodes: Placement of graph nodes

plotSimCI: Plot confidence intervals

rejectNode: Rejects a node/hypothesis and updates the graph accordingly.

replaceVariables: Replaces variables in a general graph with specified numeric...

rqmvnorm: Random sample from the multivariate normal distribution

sampSize: Sample size calculations

sampSizeCore: Function for sample size calculation

secondStageTest: EXPERIMENTAL: Construct a valid level alpha test for the...

simes.on.subsets.test: Simes on subsets, otherwise Bonferroni

simes.test: Weighted Simes test

simvastatin: Simvastatin and Colesevelam Treatment in Patients with...

subgraph: Get a subgraph

substituteEps: Substitute Epsilon

unitTestsGMCP: Run the R unit (and optional the JUnit) test suite for gMCP

weighted.test.functions: Weighted Test Functions for use with gMCP

Functions

BauerEtAl2001 Man page
bdiagNA Man page
BonferroniHolm Man page
bonferroni.test Man page
bonferroni.trimmed.simes.test Man page
BretzEtAl2009a Man page
BretzEtAl2009b Man page
BretzEtAl2009c Man page
BretzEtAl2011 Man page
calcPower Man page
corMatWizard Man page
cycleGraph Man page
doInterim Man page
edgeAttr Man page
edgeAttr<- Man page
edgeAttr<-,graphMCP,character,character,character-method Man page
edgeAttr,graphMCP,character,character,character-method Man page
Entangled1Maurer2012 Man page
Entangled2Maurer2012 Man page
entangledMCP Man page
entangledMCP-class Man page
exampleGraphs Man page
extractPower Man page
fallback Man page
Ferber2011 Man page
FerberTimeDose2011 Man page
fixedSequence Man page
generalSuccessive Man page
generateBounds Man page
generatePvals Man page
generateTest Man page
generateWeights Man page
getJavaInfo Man page
getMatrices Man page
getMatrices,entangledMCP-method Man page
getMatrix Man page
getMatrix,graphMCP-method Man page
getNodes Man page
getNodes,entangledMCP-method Man page
getNodes,graphMCP-method Man page
getRejected Man page
getRejected,entangledMCP-method Man page
getRejected,gMCPResult-method Man page
getRejected,gPADInterim-method Man page
getRejected,graphMCP-method Man page
getWeights Man page
getWeights,entangledMCP-method Man page
getWeights,gMCPResult-method Man page
getWeights,gPADInterim-method Man page
getWeights,graphMCP-method Man page
getXCoordinates Man page
getXCoordinates,entangledMCP-method Man page
getXCoordinates,graphMCP-method Man page
getYCoordinates Man page
getYCoordinates,entangledMCP-method Man page
getYCoordinates,graphMCP-method Man page
gMCP Man page
gMCP.extended Man page
gMCP-package Man page
gMCPReport Man page
gMCPResult Man page
gMCPResult-class Man page
gPADInterim Man page
gPADInterim-class Man page
graph2latex Man page
graph2matrix Man page
graphAnalysis Man page
graphGUI Man page
graphMCP Man page
graphMCP-class Man page
graphTest Man page
HommelEtAl2007 Man page
HommelEtAl2007Simple Man page
HungEtWang2010 Man page
HuqueAloshEtBhore2011 Man page
hydroquinone Man page
improvedFallbackI Man page
improvedFallbackII Man page
improvedParallelGatekeeping Man page
joinGraphs Man page
matrix2graph Man page
MaurerEtAl1995 Man page
nodeAttr Man page
nodeAttr<- Man page
nodeAttr<-,graphMCP,character,character-method Man page
nodeAttr,graphMCP,character,character-method Man page
parallelGatekeeping Man page
parametric.test Man page
placeNodes Man page
plot,gMCPResult,ANY-method Man page
plot,gPADInterim-method Man page
plot,graphMCP,ANY-method Man page
plotSimCI Man page
print,entangledMCP-method Man page
print,gMCPResult-method Man page
print,gPADInterim-method Man page
print,graphMCP-method Man page
rejectNode Man page
replaceVariables Man page
rqmvnorm Man page
sampSize Man page
sampSizeCore Man page
secondStageTest Man page
setEdge Man page
setEdge,character,character,graphMCP,character-method Man page
setEdge,character,character,graphMCP,numeric-method Man page
setRejected<- Man page
setRejected<-,graphMCP-method Man page
setWeights Man page
setWeights,graphMCP-method Man page
simConfint Man page
simConfint,graphMCP-method Man page
simes.on.subsets.test Man page
simes.test Man page
simpleSuccessiveI Man page
simpleSuccessiveII Man page
simvastatin Man page
subgraph Man page
substituteEps Man page
truncatedHolm Man page
unitTestsGMCP Man page
WangTing2014 Man page
weighted.test.functions Man page

Files

gMCP
gMCP/TODO
gMCP/inst
gMCP/inst/References.html
gMCP/inst/CITATION
gMCP/inst/java
gMCP/inst/java/gsrmtp.jar
gMCP/inst/doc
gMCP/inst/doc/AQuickStart.Rnw
gMCP/inst/doc/parametric.Rnw
gMCP/inst/doc/gMCP.R
gMCP/inst/doc/gMCP.Rnw
gMCP/inst/doc/gMCP.pdf
gMCP/inst/doc/parametric.pdf
gMCP/inst/doc/parametric.R
gMCP/inst/doc/AQuickStart.pdf
gMCP/inst/doc/AQuickStart.R
gMCP/inst/unitTests
gMCP/inst/unitTests/runit.entangled.R
gMCP/inst/unitTests/runit.randomGraph.R
gMCP/inst/unitTests/runit.LaTeX.R
gMCP/inst/unitTests/runit.misc.R
gMCP/inst/unitTests/runit.fastgMCP.R
gMCP/inst/unitTests/runit.adjPValues.R
gMCP/inst/unitTests/runit.gMCP.R
gMCP/inst/unitTests/runit.power.R
gMCP/inst/unitTests/runit.gMCP.extended.R
gMCP/inst/unitTests/runit.sampSize.R
gMCP/inst/unitTests/runit.correlation.R
gMCP/inst/unitTests/runit.graphGMCP.R
gMCP/inst/unitTests/runit.cover.everything.R
gMCP/tests
gMCP/tests/doRUnit.R
gMCP/src
gMCP/src/mcp.c
gMCP/src/gMCP.c
gMCP/NAMESPACE
gMCP/INSTALL
gMCP/NEWS
gMCP/data
gMCP/data/hydroquinone.rda
gMCP/data/simvastatin.rda
gMCP/R
gMCP/R/subVariables.R gMCP/R/onLoad.R gMCP/R/gACT-internal.R gMCP/R/gMCP.R gMCP/R/generateBounds.R gMCP/R/startGUIs.R gMCP/R/closure.R gMCP/R/exampleGraphs.R gMCP/R/analysis.R gMCP/R/graph2latex.R gMCP/R/powerPlot.R gMCP/R/generateTest.R gMCP/R/gMCP.extended.R gMCP/R/rqmvnorm.R gMCP/R/modifyGraphs.R gMCP/R/helperGUI.R gMCP/R/graphMCP.R gMCP/R/graphTest.R gMCP/R/doRUnitTests.R gMCP/R/sampSize.R gMCP/R/misc.R gMCP/R/plotCI.R gMCP/R/generateWeights.R gMCP/R/matrix2graph.R gMCP/R/generatePvals.R gMCP/R/convertFromOldClassDefinition.R gMCP/R/gPAD.R gMCP/R/calcPower.R
gMCP/vignettes
gMCP/vignettes/AQuickStart.Rnw
gMCP/vignettes/parametric.Rnw
gMCP/vignettes/pictures
gMCP/vignettes/pictures/StartTesting.png
gMCP/vignettes/pictures/edge.png
gMCP/vignettes/pictures/createCM1.png
gMCP/vignettes/pictures/zoom_in.png
gMCP/vignettes/pictures/GeneratedRCode.png
gMCP/vignettes/pictures/udpf.png
gMCP/vignettes/pictures/rjavaicon64.png
gMCP/vignettes/pictures/FullFeaturedGUI.png
gMCP/vignettes/pictures/docxExport.png
gMCP/vignettes/pictures/filemenu.png
gMCP/vignettes/pictures/PowerResults.png
gMCP/vignettes/pictures/confint2.png
gMCP/vignettes/pictures/udpf2.png
gMCP/vignettes/pictures/CIDialog.png
gMCP/vignettes/pictures/vertex.png
gMCP/vignettes/pictures/variableEditor.png
gMCP/vignettes/pictures/entangled.png
gMCP/vignettes/pictures/ImportTextLibreOffice.png
gMCP/vignettes/pictures/exportPNG.png
gMCP/vignettes/pictures/power_requirements.png
gMCP/vignettes/pictures/adjPval_b.png
gMCP/vignettes/pictures/correlated.png
gMCP/vignettes/pictures/confint2_b.png
gMCP/vignettes/pictures/example.png
gMCP/vignettes/pictures/zoom_out.png
gMCP/vignettes/pictures/arm.png
gMCP/vignettes/pictures/corMat2.png
gMCP/vignettes/pictures/Reset.png
gMCP/vignettes/pictures/adjPval.png
gMCP/vignettes/pictures/createCM3.png
gMCP/vignettes/gMCP.Rnw
gMCP/vignettes/pvals.RData
gMCP/vignettes/literatur.bib
gMCP/vignettes/myIndex.ist
gMCP/MD5
gMCP/java
gMCP/java/tests
gMCP/java/tests/DataTableTest.java
gMCP/java/tests/ToolTest.java
gMCP/java/tests/EdgeTest.java
gMCP/java/tests/RControlTest.java
gMCP/java/tests/LoadSaveTest.java
gMCP/java/tests/NetListTest.java
gMCP/java/tests/PowerTest.java
gMCP/java/tests/RJavaUTF.java
gMCP/java/tests/InteractionTest.java
gMCP/java/tests/TestSuite.java
gMCP/java/tests/TexFormulaTest.java
gMCP/java/tests/NodeTest.java
gMCP/java/tests/PPanelTest.java
gMCP/java/tests/OptionPaneTest.java
gMCP/java/org
gMCP/java/org/apache
gMCP/java/org/apache/poi
gMCP/java/org/apache/poi/xwpf
gMCP/java/org/apache/poi/xwpf/usermodel
gMCP/java/org/apache/poi/xwpf/usermodel/XWPFRun.java
gMCP/java/org/mutoss
gMCP/java/org/mutoss/gui
gMCP/java/org/mutoss/gui/TransferableImage.java
gMCP/java/org/mutoss/gui/JavaGD.java
gMCP/java/org/mutoss/gui/JavaGDPanel.java
gMCP/java/org/af
gMCP/java/org/af/gMCP
gMCP/java/org/af/gMCP/tests
gMCP/java/org/af/gMCP/tests/CircleTest.java
gMCP/java/org/af/gMCP/tests/ThreadExceptionTest.java
gMCP/java/org/af/gMCP/tests/CircleTest3Points.java
gMCP/java/org/af/gMCP/tests/TestImportExport.java
gMCP/java/org/af/gMCP/tests/FormatTest.java
gMCP/java/org/af/gMCP/tests/TeXFormulaTest.java
gMCP/java/org/af/gMCP/config
gMCP/java/org/af/gMCP/config/JavaConfig.java
gMCP/java/org/af/gMCP/config/Configuration.java
gMCP/java/org/af/gMCP/config/PlotConfig.java
gMCP/java/org/af/gMCP/config/GeneralConfig.java
gMCP/java/org/af/gMCP/config/SpecificConfig.java
gMCP/java/org/af/gMCP/config/VersionComparator.java
gMCP/java/org/af/gMCP/poi
gMCP/java/org/af/gMCP/poi/GraphDocXWriter.java
gMCP/java/org/af/gMCP/gui
gMCP/java/org/af/gMCP/gui/pdf
gMCP/java/org/af/gMCP/gui/pdf/PDFViewerStarter.java
gMCP/java/org/af/gMCP/gui/pdf/Step.java
gMCP/java/org/af/gMCP/gui/pdf/PDFGenerator.java
gMCP/java/org/af/gMCP/gui/pdf/Plot.java
gMCP/java/org/af/gMCP/gui/pdf/Result.java
gMCP/java/org/af/gMCP/gui/power
gMCP/java/org/af/gMCP/gui/power/Arm.java
gMCP/java/org/af/gMCP/gui/power/PowerResultDialog.java
gMCP/java/org/af/gMCP/gui/power/PopulationDialog.java
gMCP/java/org/af/gMCP/gui/power/SampleSizeDialog.java
gMCP/java/org/af/gMCP/gui/power/SampSizeResultTableModel.java
gMCP/java/org/af/gMCP/gui/power/KoutofNDialog.java
gMCP/java/org/af/gMCP/gui/power/EndpointDialog.java
gMCP/java/org/af/gMCP/gui/power/VariablePanel.java
gMCP/java/org/af/gMCP/gui/power/NCPCalculatorDialog.java
gMCP/java/org/af/gMCP/gui/power/XMLIO.java
gMCP/java/org/af/gMCP/gui/power/CVPanel.java
gMCP/java/org/af/gMCP/gui/power/ScenarioPanel2.java
gMCP/java/org/af/gMCP/gui/power/PDialog.java
gMCP/java/org/af/gMCP/gui/power/Scenario2.java
gMCP/java/org/af/gMCP/gui/power/UserDefinedDialog.java
gMCP/java/org/af/gMCP/gui/power/Scenario.java
gMCP/java/org/af/gMCP/gui/power/RandomizationPanel.java
gMCP/java/org/af/gMCP/gui/power/ScenarioPanel.java
gMCP/java/org/af/gMCP/gui/power/PowerReq.java
gMCP/java/org/af/gMCP/gui/power/PowerResultTableModel.java
gMCP/java/org/af/gMCP/gui/power/MarginalPowerPanel.java
gMCP/java/org/af/gMCP/gui/power/UserDefinedPanel.java
gMCP/java/org/af/gMCP/gui/power/PowerDialog.java
gMCP/java/org/af/gMCP/gui/power/SettingsToXML.java
gMCP/java/org/af/gMCP/gui/power/PowerReqPanel.java
gMCP/java/org/af/gMCP/gui/power/ScenarioPanelInterface.java
gMCP/java/org/af/gMCP/gui/power/HorizontalButtonPane.java
gMCP/java/org/af/gMCP/gui/power/NCPRequestor.java
gMCP/java/org/af/gMCP/gui/ReproducableLog.java
gMCP/java/org/af/gMCP/gui/AboutDialog.java
gMCP/java/org/af/gMCP/gui/DebugTextConsole.java
gMCP/java/org/af/gMCP/gui/ErrorDialogChooseLevel.java
gMCP/java/org/af/gMCP/gui/graph
gMCP/java/org/af/gMCP/gui/graph/PPanel.java
gMCP/java/org/af/gMCP/gui/graph/NetListPanel.java
gMCP/java/org/af/gMCP/gui/graph/PView.java
gMCP/java/org/af/gMCP/gui/graph/DView.java
gMCP/java/org/af/gMCP/gui/graph/annotations
gMCP/java/org/af/gMCP/gui/graph/annotations/Legend.java
gMCP/java/org/af/gMCP/gui/graph/annotations/Rectangle.java
gMCP/java/org/af/gMCP/gui/graph/annotations/Note.java
gMCP/java/org/af/gMCP/gui/graph/annotations/Annotation.java
gMCP/java/org/af/gMCP/gui/graph/annotations/Ellipse.java
gMCP/java/org/af/gMCP/gui/graph/annotations/Text.java
gMCP/java/org/af/gMCP/gui/graph/annotations/AnnotationPanel.java
gMCP/java/org/af/gMCP/gui/graph/annotations/Line.java
gMCP/java/org/af/gMCP/gui/graph/annotations/package-info.java
gMCP/java/org/af/gMCP/gui/graph/images
gMCP/java/org/af/gMCP/gui/graph/images/StartTesting.png
gMCP/java/org/af/gMCP/gui/graph/images/edge.png
gMCP/java/org/af/gMCP/gui/graph/images/zoom_in.png
gMCP/java/org/af/gMCP/gui/graph/images/questionmark.png
gMCP/java/org/af/gMCP/gui/graph/images/rjavaicon64.png
gMCP/java/org/af/gMCP/gui/graph/images/matrix.png
gMCP/java/org/af/gMCP/gui/graph/images/questionmark32.png
gMCP/java/org/af/gMCP/gui/graph/images/back.png
gMCP/java/org/af/gMCP/gui/graph/images/confint2.png
gMCP/java/org/af/gMCP/gui/graph/images/update24.png
gMCP/java/org/af/gMCP/gui/graph/images/vertex.png
gMCP/java/org/af/gMCP/gui/graph/images/update.png
gMCP/java/org/af/gMCP/gui/graph/images/zoom_out.png
gMCP/java/org/af/gMCP/gui/graph/images/questionmark64.png
gMCP/java/org/af/gMCP/gui/graph/images/Reset.png
gMCP/java/org/af/gMCP/gui/graph/images/adjPval.png
gMCP/java/org/af/gMCP/gui/graph/images/latex.png
gMCP/java/org/af/gMCP/gui/graph/EdgeWeight.java
gMCP/java/org/af/gMCP/gui/graph/GraphView.java
gMCP/java/org/af/gMCP/gui/graph/GraphMCP.java
gMCP/java/org/af/gMCP/gui/graph/UpdateNode.java
gMCP/java/org/af/gMCP/gui/graph/PrintableObject.java
gMCP/java/org/af/gMCP/gui/graph/UpdateEdge.java
gMCP/java/org/af/gMCP/gui/graph/Edge.java
gMCP/java/org/af/gMCP/gui/graph/NetList.java
gMCP/java/org/af/gMCP/gui/graph/NodeListener.java
gMCP/java/org/af/gMCP/gui/graph/WrongInputException.java
gMCP/java/org/af/gMCP/gui/graph/Physics.java
gMCP/java/org/af/gMCP/gui/graph/NetListPopUpMenu.java
gMCP/java/org/af/gMCP/gui/graph/GraphPanel.java
gMCP/java/org/af/gMCP/gui/graph/SubFamily.java
gMCP/java/org/af/gMCP/gui/graph/Node.java
gMCP/java/org/af/gMCP/gui/graph/LaTeXTool.java
gMCP/java/org/af/gMCP/gui/graph/NetListSelectionPopUpMenu.java
gMCP/java/org/af/gMCP/gui/CreateGraphGUI.java
gMCP/java/org/af/gMCP/gui/options
gMCP/java/org/af/gMCP/gui/options/SetPropertiesException.java
gMCP/java/org/af/gMCP/gui/options/SetLookAndFeelException.java
gMCP/java/org/af/gMCP/gui/options/OptionsDialog.java
gMCP/java/org/af/gMCP/gui/options/GeneralPanel.java
gMCP/java/org/af/gMCP/gui/options/MiscPanel.java
gMCP/java/org/af/gMCP/gui/options/OptionsPanel.java
gMCP/java/org/af/gMCP/gui/options/NumericPanel.java
gMCP/java/org/af/gMCP/gui/MenuBarMGraph.java
gMCP/java/org/af/gMCP/gui/commons-logging-verbose.properties
gMCP/java/org/af/gMCP/gui/commons-logging.properties
gMCP/java/org/af/gMCP/gui/JSplitPaneBugWorkAround.java
gMCP/java/org/af/gMCP/gui/ErrorDialogGMCP.java
gMCP/java/org/af/gMCP/gui/datatable
gMCP/java/org/af/gMCP/gui/datatable/DataFramePanel.java
gMCP/java/org/af/gMCP/gui/datatable/DataTableModel.java
gMCP/java/org/af/gMCP/gui/datatable/RowModel.java
gMCP/java/org/af/gMCP/gui/datatable/EpsilonTableCellRenderer.java
gMCP/java/org/af/gMCP/gui/datatable/CellEditorE.java
gMCP/java/org/af/gMCP/gui/datatable/SingleDataFramePanel.java
gMCP/java/org/af/gMCP/gui/datatable/DataTable.java
gMCP/java/org/af/gMCP/gui/datatable/RDataFrameRef.java
gMCP/java/org/af/gMCP/gui/ErrorDialogChooseLevelBase.java
gMCP/java/org/af/gMCP/gui/contrasts
gMCP/java/org/af/gMCP/gui/contrasts/ContrastTableModel.java
gMCP/java/org/af/gMCP/gui/contrasts/VarSelectBox.java
gMCP/java/org/af/gMCP/gui/contrasts/ROptionBox.java
gMCP/java/org/af/gMCP/gui/contrasts/GroupingBox.java
gMCP/java/org/af/gMCP/gui/contrasts/LevelOrderListener.java
gMCP/java/org/af/gMCP/gui/contrasts/StatMethodDialog.java
gMCP/java/org/af/gMCP/gui/contrasts/AnalysisDialogListenerFactory.java
gMCP/java/org/af/gMCP/gui/contrasts/GroupingListener.java
gMCP/java/org/af/gMCP/gui/contrasts/ContrastDialog2.java
gMCP/java/org/af/gMCP/gui/contrasts/LevelOrderSL.java
gMCP/java/org/af/gMCP/gui/contrasts/ContrastColorRenderer.java
gMCP/java/org/af/gMCP/gui/contrasts/AnalysisDialogFactory.java
gMCP/java/org/af/gMCP/gui/contrasts/ContrastTable.java
gMCP/java/org/af/gMCP/gui/contrasts/LevelSelectBox.java
gMCP/java/org/af/gMCP/gui/dialogs
gMCP/java/org/af/gMCP/gui/dialogs/GroupDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/PowerOptionsPanel.java
gMCP/java/org/af/gMCP/gui/dialogs/MatrixCreationDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/RejectedDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/RearrangeNodesDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/PowerParameterPanel.java
gMCP/java/org/af/gMCP/gui/dialogs/VariableDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/InfoDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/VariableNameDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/GraphSendToArchiveDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/AlternativesDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/AdjustedPValueDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/TellAboutOnlineUpate.java
gMCP/java/org/af/gMCP/gui/dialogs/ColorChooseDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/DialogConfIntEstVar.java
gMCP/java/org/af/gMCP/gui/dialogs/PowersettingsToXML.java
gMCP/java/org/af/gMCP/gui/dialogs/ParameterDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/NewVersionDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/TextFileViewer.java
gMCP/java/org/af/gMCP/gui/dialogs/RObjectLoadingDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/ImageExportDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/LoadGraphFromArchiveDialog.java
gMCP/java/org/af/gMCP/gui/dialogs/ImagePanel.java
gMCP/java/org/af/gMCP/gui/dialogs/GraphSaveDialog.java
gMCP/java/org/af/gMCP/gui/RCallServicesREngineWrapper.java
gMCP/java/org/af/gMCP/gui/RControl.java
gMCP/java/build.xml
gMCP/build
gMCP/build/vignette.rds
gMCP/DESCRIPTION
gMCP/man
gMCP/man/plotSimCI.Rd gMCP/man/substituteEps.Rd gMCP/man/placeNodes.Rd gMCP/man/gPADInterim.Rd gMCP/man/gMCPResult.Rd gMCP/man/graphGUI.Rd gMCP/man/sampSize.Rd gMCP/man/exampleGraphs.Rd gMCP/man/subgraph.Rd gMCP/man/gMCP-package.Rd gMCP/man/entangled.Rd gMCP/man/matrix2graph.Rd gMCP/man/hydroquinone.Rd gMCP/man/generateBounds.Rd gMCP/man/gMCPReport.Rd gMCP/man/bdiagNA.Rd gMCP/man/rqmvnorm.Rd gMCP/man/graphTest.Rd gMCP/man/weighted.test.functions.Rd gMCP/man/confint.Rd gMCP/man/simvastatin.Rd gMCP/man/generateTest.Rd gMCP/man/graph2latex.Rd gMCP/man/gMCP.Rd gMCP/man/rejectNode.Rd gMCP/man/gMCP.extended.Rd gMCP/man/bonferroni.test.Rd gMCP/man/secondStageTest.Rd gMCP/man/extractPower.Rd gMCP/man/joinGraphs.Rd gMCP/man/graphAnalysis.Rd gMCP/man/simes.on.subsets.test.Rd gMCP/man/parametric.test.Rd gMCP/man/bonferroni.trimmed.simes.test.Rd gMCP/man/sampSizeCore.Rd gMCP/man/generateWeights.Rd gMCP/man/generatePvals.Rd gMCP/man/unitTestsGMCP.Rd gMCP/man/doInterim.Rd gMCP/man/getJavaInfo.Rd gMCP/man/graphMCP.Rd gMCP/man/simes.test.Rd gMCP/man/corMatWizard.Rd gMCP/man/replaceVariables.Rd gMCP/man/calcPower.Rd
gMCP/.Rinstignore

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