gMCP-package: Graphical described Multiple Comparison Procedures

In gMCP: Graph Based Multiple Comparison Procedures

Graphical described Multiple Comparison Procedures

Description

This package provides functions and graphical user interfaces for graphical described multiple comparison procedures.

Details

Package:	gMCP
Type:	Package
License:	GPL (>= 2)

The package gMCP helps with the following steps of performing a multiple test procedure:

1. Creating a object of graphMCP that represents a sequentially rejective multiple test procedure. This can be either done directly via the new function or converter functions like matrix2graph at the R command line or by using a graphical user interface started with function graphGUI.

2. Calling gMCP or graphGUI.

3. Exporting the results (optional with all sequential steps) as LaTeX or Word report.

Note

We use the following Java libraries:

• Apache Commons Logging under the Apache License, Version 2.0, January 2004, https://commons.apache.org/logging/, Copyright 2001-2007 The Apache Software Foundation

• Apache jog4j under Apache License 2.0, https://logging.apache.org/log4j/, Copyright 2007 The Apache Software Foundation

• Apache Commons Lang under Apache License 2.0, https://commons.apache.org/lang/, Copyright 2001-2011 The Apache Software Foundation

• Apache POI under Apache License 2.0, https://poi.apache.org/, Copyright The Apache Software Foundation

• JLaTeXMath under GPL >= 2.0, https://forge.scilab.org/index.php/p/jlatexmath/, Copyright 2004-2007, 2009 Calixte, Coolsaet, Cleemput, Vermeulen and Universiteit Gent

• JRI under Lesser General Public License (LGPL) 2.1, https://www.rforge.net/rJava/, Copyright 2004-2007 Simon Urbanek

• iText 2.1.4 under LGPL, https://itextpdf.com/, Copyright by Bruno Lowagie

• SwingWorker under LGPL, from java.net/projects/swingworker/, Copyright (c) 2005 Sun Microsystems

• JXLayer under BSD License, from java.net/projects/jxlayer/, Copyright 2006-2009, Alexander Potochkin

• JGoodies Forms under BSD License, https://www.jgoodies.com/freeware/libraries/forms/, Copyright JGoodies Karsten Lentzsch

• AFCommons under BSD License, https://web.archive.org/web/20180828002833/http://www.algorithm-forge.com/afcommons/, Copyright (c) 2007-2014 by Kornelius Rohmeyer and Bernd Bischl

• JHLIR under BSD License, https://jhlir.r-forge.r-project.org/, Copyright (c) 2008-2014 by Bernd Bischl and Kornelius Rohmeyer

Author(s)

Kornelius Rohmeyer, R code for correlated tests and adaptive designs from Florian Klinglmueller.

Maintainer: Kornelius Rohmeyer [e-mail]

References

Frank Bretz, Martin Posch, Ekkehard Glimm, Florian Klinglmueller, Willi Maurer, Kornelius Rohmeyer (2011): Graphical approaches for multiple comparison procedures using weighted Bonferroni, Simes or parametric tests. Biometrical Journal 53 (6), pages 894-913, Wiley. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1002/bimj.201000239")}

Frank Bretz, Willi Maurer, Werner Brannath, Martin Posch: A graphical approach to sequentially rejective multiple test procedures. Statistics in Medicine 2009 vol. 28 issue 4 page 586-604. https://www.meduniwien.ac.at/fwf_adaptive/papers/bretz_2009_22.pdf

Examples

g5 <- BonferroniHolm(5)
## Not run: 
graphGUI("g5")
## End(Not run)
gMCP(g5, pvalues=c(0.1,0.2,0.4,0.4,0.4))

gMCP documentation built on May 29, 2024, 9:37 a.m.