chr_pos_a1_a2: SNP id by chr:pos+a1/a2

In gap: Genetic Analysis Package

SNP id by chr:pos+a1/a2

Description

SNP id by chr:pos+a1/a2

Usage

chr_pos_a1_a2(
  chr,
  pos,
  a1,
  a2,
  prefix = "chr",
  seps = c(":", "_", "_"),
  uppercase = TRUE
)

Arguments

chr	Chromosome.
pos	Position.
a1	Allele 1.
a2	Allele 2.
prefix	Prefix of the identifier.
seps	Delimiters.
uppercase	A flag to return in upper case.

Details

This function generates unique identifiers for variants

Value

Identifier.

Examples

# rs12075
chr_pos_a1_a2(1,159175354,"A","G",prefix="chr",seps=c(":","_","_"),uppercase=TRUE)

gap documentation built on Sept. 11, 2024, 5:36 p.m.