Files in gap
Genetic Analysis Package
MD5
ChangeLog
NAMESPACE
DESCRIPTION
R/gc.lambda.R
R/gcp.R
R/hap.R
R/chrs.R
R/gif.R
R/qtl2dplot.R
R/labelManhattan.R
R/kin.morgan.R
R/qtl2dplotly.R
R/cis.vs.trans.classification.R
R/makeRLEplots.R
R/cnvplot.R
R/revStrand.R
R/KCC.R
R/onload.R
R/hwe.cc.R
R/pfc.R
R/log10p.R
R/bt.R
R/get_pve_se.R
R/metap.R
R/genecounting.R
R/hwe.R
R/chow.test.R
R/mtdt2.R
R/h2G.R
R/hwe.hardy.R
R/mr_forestplot.R
R/masize.R
R/mhtplot2.R
R/gap.R
R/ccsize.R
R/muvar.R
R/miamiplot2.R
R/2ld.R
R/qtlClassifier.R
R/BFDP.R
R/hapfun.R
R/metareg.R
R/h2.jags.R
R/hap.score.R
R/METAL_forestplot.R
R/circos.mhtplot.R
R/ESplot.R
R/circos.cnvplot.R
R/AE3.R
R/mvmeta.R
R/log10pvalue.R
R/ab.R
R/sentinels.R
R/logp.R
R/whscore.R
R/cs.R
R/get_sdy.R
R/asplot.R
R/gcontrol2.R
R/pfc.sim.R
R/pbsize2.R
R/invnormal.R
R/mr.R
R/pedtodot_verbatim.R
R/runshinygap.R
R/makeped.R
R/mhtplot.trunc.R
R/comp.score.R
R/hwe.jags.R
R/pedtodot.R
R/mia.R
R/mtdt.R
R/SNP.R
R/read.ms.output.R
R/mhtplot.R
R/gap-internal.R
R/miamiplot.R
R/pbsize.R
R/snptest_sample.R
R/circos.mhtplot2.R
R/h2GE.R
R/b2r.R
R/fbsize.R
R/htr.R
R/MCMCgrm.R
R/circos.cis.vs.trans.plot.R
R/gc.em.R
R/qtl3dplotly.R
R/qqfun.R
R/get_b_se.R
R/pgc.R
R/s2k.R
R/hap.control.R
R/tscc.R
R/snpid.R
R/qqunif.R
R/gcontrol.R
R/pvalue.R
R/h2l.R
R/FPRP.R
R/hap.em.R
R/utils.R
R/h2_mzdz.R
src/ignore.h
src/pfc.f
src/hwe.hardy.c
src/muvar.c
src/whscore.c
src/pgc_c.c
src/mia.c
src/hap_c.c
src/2k.c
src/cline.h
src/package_native_routine_registration_skeleton.c
src/gcx.c
src/2ld.c
src/nghds.h
src/cline.c
src/makeped_c.c
src/pgc.h
src/gif_c.c
src/gdef.h
src/gcontrol_c.c
src/kin.morgan.c
src/pfc.sim.f
src/hap.h
inst/README.md
inst/REFERENCES.bib
inst/CITATION
inst/doc/jss.pdf
inst/doc/gap.R
inst/doc/gap.Rmd
inst/doc/gap.html
inst/doc/jss.Rnw
inst/doc/shinygap.Rmd
inst/doc/shinygap.html
inst/shinygap/ui.R
inst/shinygap/README.md
inst/shinygap/DESCRIPTION
inst/shinygap/server.R
inst/shinygap/R/global.R
inst/shinygap/rsconnect/shinyapps.io/jinghuazhao/shinygap.dcf
inst/ms/www
inst/ms/ms.c
inst/ms/msdoc.txt
inst/ms/ms.h
inst/ms/rand1.c
inst/ms/streec.c
inst/ms/rand2.c
inst/ms/clms
inst/JAGS/hwe.jags
inst/JAGS/h2.jags
inst/scripts/pedtodot.sh
inst/scripts/GRCh.R
demo/gap.R
demo/00Index
build/vignette.rds
build/partial.rdb
vignettes/jsslogo.jpg
vignettes/nature-genetics.csl
vignettes/figure1.jpg
vignettes/gap.Rmd
vignettes/IL-12B.png
vignettes/jss.bib
vignettes/jss.Rnw
vignettes/shinygap.Rmd
data/datalist
data/hg19.rda
data/hg18.rda
data/hg38.rda
man/pfc.Rd
man/pfc.sim.Rd
man/get_b_se.Rd
man/pbsize2.Rd
man/mhtplot2.Rd
man/h2l.Rd
man/cis.vs.trans.classification.Rd
man/inv_chr_pos_a1_a2.Rd
man/revStrand.Rd
man/ccsize.Rd
man/miamiplot.Rd
man/pedtodot_verbatim.Rd
man/s2k.Rd
man/ReadGRM.Rd
man/allele.recode.Rd
man/LDkl.Rd
man/WriteGRM.Rd
man/cs.Rd
man/hg38.Rd
man/comp.score.Rd
man/ixy.Rd
man/ci2ms.Rd
man/mia.Rd
man/LD22.Rd
man/pbsize.Rd
man/gap.Rd
man/mtdt2.Rd
man/whscore.Rd
man/g2a.Rd
man/print.hap.score.Rd
man/log10pvalue.Rd
man/muvar.Rd
man/snptest_sample.Rd
man/ReadGRMBin.Rd
man/chow.test.Rd
man/BFDP.Rd
man/ab.Rd
man/pvalue.Rd
man/logp.Rd
man/hwe.cc.Rd
man/hap.score.Rd
man/invnormal.Rd
man/gc.lambda.Rd
man/cnvplot.Rd
man/tscc.Rd
man/grid2d.Rd
man/ESplot.Rd
man/kin.morgan.Rd
man/AE3.Rd
man/hmht.control.Rd
man/qtlClassifier.Rd
man/hg18.Rd
man/hap.Rd
man/WriteGRMBin.Rd
man/circos.cis.vs.trans.plot.Rd
man/get_pve_se.Rd
man/plot.hap.score.Rd
man/hwe.jags.Rd
man/gcontrol2.Rd
man/runshinygap.Rd
man/MCMCgrm.Rd
man/SNP.Rd
man/xy.Rd
man/mht.control.Rd
man/mr.Rd
man/gc.em.Rd
man/miamiplot2.Rd
man/h2_mzdz.Rd
man/gif.Rd
man/pgc.Rd
man/mhtplot.Rd
man/read.ms.output.Rd
man/fbsize.Rd
man/metareg.Rd
man/pedtodot.Rd
man/htr.Rd
man/masize.Rd
man/qtl2dplotly.Rd
man/mhtplot.trunc.Rd
man/mtdt.Rd
man/qtl3dplotly.Rd
man/h2GE.Rd
man/hap.control.Rd
man/asplot.Rd
man/makeped.Rd
man/mr_forestplot.Rd
man/hwe.Rd
man/bt.Rd
man/metap.Rd
man/geno.recode.Rd
man/FPRP.Rd
man/qqunif.Rd
man/hap.em.Rd
man/b2r.Rd
man/h2.jags.Rd
man/labelManhattan.Rd
man/circos.cnvplot.Rd
man/KCC.Rd
man/mvmeta.Rd
man/circos.mhtplot2.Rd
man/klem.Rd
man/h2G.Rd
man/METAL_forestplot.Rd
man/gcontrol.Rd
man/circos.mhtplot.Rd
man/hwe.hardy.Rd
man/qqfun.Rd
man/a2g.Rd
man/log10p.Rd
man/qtl2dplot.Rd
man/genecounting.Rd
man/hg19.Rd
man/sentinels.Rd
man/chr_pos_a1_a2.Rd
man/gcp.Rd
man/get_sdy.Rd
