pfc: Probability of familial clustering of disease

In gap: Genetic Analysis Package

Probability of familial clustering of disease

Description

Probability of familial clustering of disease

Usage

pfc(famdata, enum = 0)

Arguments

famdata	collective information of sib size, number of affected sibs and their frequencies.
enum	a switch taking value 1 if all possible tables are to be enumerated.

Details

To calculate exact probability of familial clustering of disease

Value

The returned value is a list containing (tailp,sump,nenum are only available if enum=1:

• p the probabitly of familial clustering.

• stat the deviances, chi-squares based on binomial and hypergeometric distributions, the degrees of freedom should take into account the number of marginals used.

• tailp the exact statistical significance.

• sump sum of the probabilities used for error checking.

• nenum the total number of tables enumerated.

Note

Adapted from family.for by Dani Zelterman, 25/7/03

Author(s)

Dani Zelterman, Jing Hua Zhao

References

\insertRef

yu01gap

\insertRef

yu02gap

See Also

kin.morgan

Examples

## Not run: 
# IPF among 203 siblings of 100 COPD patients from Liang KY, SL Zeger,
# Qaquish B. Multivariate regression analyses for categorical data
# (with discussion). J Roy Stat Soc B 1992, 54:3-40

# the degrees of freedom is 15
famtest<-c(
1, 0, 36,
1, 1, 12,
2, 0, 15,
2, 1,  7,
2, 2,  1,
3, 0,  5,
3, 1,  7,
3, 2,  3,
3, 3,  2,
4, 0,  3,
4, 1,  3,
4, 2,  1,
6, 0,  1,
6, 2,  1,
6, 3,  1,
6, 4,  1,
6, 6,  1)
test<-t(matrix(famtest,nrow=3))
famp<-pfc(test)

## End(Not run)

gap documentation built on Aug. 26, 2023, 5:07 p.m.