API for gap
Genetic Analysis Package

Global functions
.onUnload	Source code
AE3	Man page Source code
BFDP	Man page Source code
Cox.T	Source code
Cox.est	Source code
DevH0dominant	Source code
DevH0dominant.est	Source code
DevH0recessive	Source code
DevH0recessive.est	Source code
DevHaGdominant	Source code
DevHaGdominant.est	Source code
DevHaGrecessive	Source code
DevHaGrecessive.est	Source code
ESplot	Man page Source code
FPRP	Man page
HapDesign	Source code
HapFreqSE	Source code
KCC	Man page Source code
LD22	Man page Source code
LDkl	Man page Source code
MCMCgrm	Man page Source code
METAL_forestplot	Man page Source code
PARn	Man page Source code
ReadGRM	Man page Source code
ReadGRMBin	Man page Source code
ReadGRMPCA	Source code
ReadGRMPLINK	Source code
VR	Source code
WriteGRM	Man page Source code
WriteGRMBin	Man page Source code
WriteGRMSAS	Source code
_PACKAGE	Man page
a2g	Man page Source code
ab	Man page Source code
allDuplicated	Source code
allele.recode	Man page
alpha.f	Source code
antilogit	Source code
asplot	Man page
b2r	Man page Source code
bt	Man page Source code
ccsize	Man page Source code
chow.test	Man page Source code
chr_pos_a1_a2	Man page Source code
ci2ms	Man page Source code
circos.cis.vs.trans.plot	Man page Source code
circos.cnvplot	Man page Source code
circos.mhtplot	Man page Source code
circos.mhtplot2	Man page Source code
cis.vs.trans.classification	Man page Source code
cnvplot	Man page Source code
comp.score	Man page Source code
cov.invlogit	Source code
covfun	Source code
cs	Man page Source code
fbsize	Man page
g2a	Man page
gap	Man page
gap-package	Man page
gc.control	Source code
gc.em	Man page Source code
gc.lambda	Man page Source code
gcode	Source code
gcontrol	Man page Source code
gcontrol2	Man page Source code
gcp	Man page Source code
genecounting	Man page Source code
geno.recode	Man page
getPTE	Source code
get_b_se	Man page Source code
get_pve_se	Man page Source code
get_sdy	Man page Source code
getb0	Source code
getb1star	Source code
gif	Man page Source code
grid2d	Man page Source code
h2.jags	Man page Source code
h2G	Man page Source code
h2GE	Man page Source code
h2_mzdz	Man page Source code
h2l	Man page Source code
hap	Man page Source code
hap.control	Man page Source code
hap.em	Man page Source code
hap.score	Man page Source code
hap.score.glm	Source code
hap.score.podds	Source code
hg18	Man page
hg19	Man page
hg38	Man page
hmht.control	Man page Source code
htr	Man page Source code
hwe	Man page Source code
hwe.cc	Man page Source code
hwe.hardy	Man page Source code
hwe.jags	Man page Source code
inv_chr_pos_a1_a2	Man page Source code
invnormal	Man page Source code
is.miss	Source code
ixy	Man page Source code
kin.coef	Source code
kin.morgan	Man page Source code
klem	Man page Source code
labelManhattan	Man page Source code
lambda1000	Source code
log10p	Man page Source code
log10pvalue	Man page Source code
logp	Man page Source code
m2plem	Source code
makeContent.textboxtree	Source code
makeRLEplot	Source code
makeped	Man page Source code
masize	Man page Source code
metap	Man page Source code
metareg	Man page Source code
mht.control	Man page Source code
mhtplot	Man page Source code
mhtplot.trunc	Man page
mhtplot2	Man page
mia	Man page Source code
miamiplot	Man page
miamiplot2	Man page Source code
mr	Man page Source code
mr.boot	Source code
mr_forestplot	Man page Source code
mtdt	Man page Source code
mtdt2	Man page Source code
muvar	Man page Source code
mvmeta	Man page Source code
pair.data	Source code
pbsize	Man page
pbsize2	Man page Source code
pedtodot	Man page Source code
pedtodot_verbatim	Man page Source code
pfc	Man page Source code
pfc.sim	Man page Source code
pfix	Source code
pgc	Man page
plem2m	Source code
plot.hap.score	Man page Source code
print.hap.score	Man page Source code
pvalue	Man page
qqfun	Man page Source code
qqunif	Man page Source code
qtl2dplot	Man page Source code
qtl2dplotly	Man page Source code
qtl3dplotly	Man page Source code
qtlClassifier	Man page
read.ms.output	Man page Source code
reorder	Source code
revStrand	Man page Source code
revhap	Source code
revhap.i	Source code
runshinygap	Man page
s2k	Man page Source code
score	Source code
score.core	Source code
se.exp	Source code
se.invlogit	Source code
sentinels	Man page Source code
snpHWE	Man page Source code
snpPAR	Man page Source code
snpPVE	Man page Source code
snptest_sample	Man page Source code
solve_skol	Source code
sun3d	Source code
textbox	Source code
toETDT	Source code
tscc	Man page Source code
ungcode	Source code
vec	Source code
weighted.median	Source code
whscore	Man page Source code
x2	Source code
xy	Man page Source code
z	Source code