genieBPC: Project GENIE BioPharma Collaborative Data Processing Pipeline

The American Association Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) BioPharma Collaborative represents a multi-year, multi-institution effort to build a pan-cancer repository of linked clinico-genomic data. The genomic and clinical data are provided in multiple releases (separate releases for each cancer cohort with updates following data corrections), which are stored on the data sharing platform 'Synapse' <>. The 'genieBPC' package provides a seamless way to obtain the data corresponding to each release from 'Synapse' and to prepare datasets for analysis.

Package details

AuthorJessica A. Lavery [aut, cre] (<>), Michael A. Curry [aut] (<>), Samantha Brown [aut] (<>), Karissa Whiting [aut] (<>), Axel Martin [aut], Daniel D. Sjoberg [ctb] (<>)
MaintainerJessica A. Lavery <>
LicenseMIT + file LICENSE
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the genieBPC package in your browser

Any scripts or data that you put into this service are public.

genieBPC documentation built on Oct. 29, 2022, 1:14 a.m.