Files in genieBPC
Project GENIE BioPharma Collaborative Data Processing Pipeline

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
LICENSE
R/genieBPC-package.R R/synapse_version.R R/drug_regimen_sunburst.R R/pull_data_synapse.R R/fetch_samples.R R/data.R R/select_unique_ngs.R R/synapse_authentication.R R/create_analytic_cohort.R
inst/WORDLIST
inst/doc/create_analytic_cohort_vignette.R inst/doc/pull_data_synapse_vignette.R inst/doc/clinical_data_structure_vignette.R inst/doc/clinical_data_structure_vignette.Rmd
inst/doc/select_unique_ngs_vignette.html
inst/doc/drug_regimen_sunburst_vignette.R
inst/doc/create_analytic_cohort_vignette.html
inst/doc/drug_regimen_sunburst_vignette.html
inst/doc/drug_regimen_sunburst_vignette.Rmd inst/doc/pull_data_synapse_vignette.Rmd
inst/doc/pull_data_synapse_vignette.html
inst/doc/select_unique_ngs_vignette.R
inst/doc/clinical_data_structure_vignette.html
inst/doc/select_unique_ngs_vignette.Rmd inst/doc/create_analytic_cohort_vignette.Rmd
build/vignette.rds
tests/testthat.R tests/spelling.R tests/testthat/test-drug_regimen_sunburst.R tests/testthat/test-create_analytic_cohort.R tests/testthat/test-fetch_samples.R tests/testthat/test-select_unique_ngs.R tests/testthat/test-check_synapse_login.R tests/testthat/test-synapse_version.R tests/testthat/test-pull_data_synapse.R vignettes/clinical_data_structure_vignette.Rmd vignettes/drug_regimen_sunburst_vignette.Rmd
vignettes/geniebpc_hex_sticker.png
vignettes/pull_data_synapse_vignette.Rmd vignettes/select_unique_ngs_vignette.Rmd vignettes/create_analytic_cohort_vignette.Rmd
data/drug_regimen_list.rda
data/regimen_abbreviations.rda
data/nsclc_test_data.rda
data/synapse_tables.rda
data/genie_panels.rda
man/create_analytic_cohort.Rd man/genieBPC-package.Rd man/dot-get_env.Rd man/check_genie_access.Rd man/dot-get_synapse_token.Rd man/nsclc_test_data.Rd man/select_unique_ngs.Rd man/drug_regimen_list.Rd man/dot-resolve_duplicates.Rd man/dot-is_connected_to_genie.Rd man/drug_regimen_sunburst.Rd man/genie_panels.Rd man/synapse_tables.Rd man/fetch_samples.Rd man/set_synapse_credentials.Rd man/dot-pull_data_by_cohort.Rd man/synapse_version.Rd man/dot-check_download_path.Rd man/dot-get_and_query_file_url.Rd man/pull_data_synapse.Rd man/regimen_abbreviations.Rd
man/figures/geniebpc_hex_sticker.png
man/figures/genieBPC_sunburst.png
man/figures/genieBPC_sunburst2.png
genieBPC documentation built on Oct. 29, 2022, 1:14 a.m.