Files in genieBPC

Project GENIE BioPharma Collaborative Data Processing Pipeline

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/genieBPC-package.R R/synapse_version.R R/drug_regimen_sunburst.R R/pull_data_synapse.R R/data.R R/select_unique_ngs.R R/synapse_authentication.R R/create_analytic_cohort.R

inst/WORDLIST

inst/doc/create_analytic_cohort_vignette.R inst/doc/pull_data_synapse_vignette.R inst/doc/clinical_data_structure_vignette.R inst/doc/clinical_data_structure_vignette.Rmd

inst/doc/select_unique_ngs_vignette.html

inst/doc/drug_regimen_sunburst_vignette.R

inst/doc/create_analytic_cohort_vignette.html

inst/doc/drug_regimen_sunburst_vignette.html

inst/doc/drug_regimen_sunburst_vignette.Rmd inst/doc/pull_data_synapse_vignette.Rmd

inst/doc/pull_data_synapse_vignette.html

inst/doc/select_unique_ngs_vignette.R

inst/doc/clinical_data_structure_vignette.html

inst/doc/select_unique_ngs_vignette.Rmd inst/doc/create_analytic_cohort_vignette.Rmd

build/vignette.rds

tests/testthat.R tests/spelling.R tests/testthat/test-drug_regimen_sunburst.R tests/testthat/test-create_analytic_cohort.R tests/testthat/test-select_unique_ngs.R tests/testthat/test-check_synapse_login.R tests/testthat/test-synapse_version.R tests/testthat/test-pull_data_synapse.R vignettes/clinical_data_structure_vignette.Rmd vignettes/drug_regimen_sunburst_vignette.Rmd

vignettes/geniebpc_hex_sticker.png

vignettes/pull_data_synapse_vignette.Rmd vignettes/select_unique_ngs_vignette.Rmd vignettes/create_analytic_cohort_vignette.Rmd

data/drug_regimen_list.rda

data/regimen_abbreviations.rda

data/nsclc_test_data.rda

data/synapse_tables.rda

data/genie_panels.rda

man/create_analytic_cohort.Rd man/genieBPC-package.Rd man/dot-get_env.Rd man/check_genie_access.Rd man/dot-get_synapse_token.Rd man/nsclc_test_data.Rd man/select_unique_ngs.Rd man/drug_regimen_list.Rd man/dot-resolve_duplicates.Rd man/dot-is_connected_to_genie.Rd man/drug_regimen_sunburst.Rd man/genie_panels.Rd man/synapse_tables.Rd man/set_synapse_credentials.Rd man/dot-pull_data_by_cohort.Rd man/synapse_version.Rd man/dot-check_download_path.Rd man/dot-get_and_query_file_url.Rd man/pull_data_synapse.Rd man/regimen_abbreviations.Rd

man/figures/geniebpc_hex_sticker.png

man/figures/genieBPC_sunburst.png

man/figures/genieBPC_sunburst2.png

genieBPC documentation built on March 7, 2023, 6:46 p.m.