Add PANC v1.1-consortium, Prostate v1.1-consortium, BrCa 1.2-consortium, PANC v1.2-consortium, Prostate v1.2-consortium, CRC 2.0-public data releases
Removed fetch_samples()
function (#91)
Updated pull_data_synapse()
to read "NA" as NA values instead of as character "NA" so that CNA columns are numeric, as expected (#88)
Ensure consistent order of datasets returned from calls to
pull_data_synapse()
Added citations & links to GENIE BPC publications to README
Updates to select_unique_ngs()
documentation and vignettes, as well as
clarification of the messaging returned when the function is run (#57)
Update selecting functions to account for tidyselect
v1.2.0 release
(issue #83)
Documentation updates following Bioinformatics reviewer comments (issue #75)
Update drug_regimen_sunburst()
to pass additional arguments to
sunburstR::sunburst()
(issue #71)
Added CRAN installation instructions to README (issue #72)
Add CRAN badge to README (issue #69)
Update handling of missing data when reading in csv files in
pull_data_synapse()
so that missing data is stored as NA and not as "" (issue
Changed print()
to message()
in select_unique_ngs()
Removed TramineR
from dependencies file (issue #50)
Incorporated the most recent public and consortium data releases (issue #42)
Removed synapser
from dependencies file (issue #45)
Fixed cpt_sample_type
/sample_type
issue in fetch_samples.R
(issue #43)
Added .is_connected_to_genie()
to replace .check_synapse_login()
and
return logical TRUE/FALSE. This is an internal function that can be used to
trigger tests/checks as needed and will hopefully allow the package to now
pass the CRAN checks.
Added drug names for breast cancer cohort
Update examples to use test data, when possible
NEWS.md
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