dot-get_and_query_file_url: Get URL for a given 'Synapse' file and download to local...

In genieBPC: Project GENIE BioPharma Collaborative Data Processing Pipeline

Get URL for a given 'Synapse' file and download to local machine

Description

Get URL for a given 'Synapse' file and download to local machine

Usage

.get_and_query_file_url(
  version_num,
  file_handle_id,
  synapse_id,
  df,
  name,
  download_folder,
  download_location,
  token,
  file_endpoint_url
)

Arguments

version_num	cohort name and version
file_handle_id	'Synapse' file handle ID
synapse_id	'Synapse' ID
df	package designated name of file
name	file name from 'Synapse'
download_folder	location to download data
token	Synapse token
file_endpoint_url	'Synapse' endpoint for file info

Value

list of 'Synapse' data frames

Examples

file <- data.frame(
  version_num = "NSCLC_v2.1",
  file_handle_id = c("79432768"),
  synapse_id = c("syn25985884"),
  df = c("pt_char"),
  name = c("patient_level_dataset.csv"),
  download_folder = file.path(tempdir(), "NSCLC_v2.1")
)

purrr::pmap(file, .get_and_query_file_url)

genieBPC documentation built on March 7, 2023, 6:46 p.m.