genieBPC-package: genieBPC: Project GENIE BioPharma Collaborative Data...

In genieBPC: Project GENIE BioPharma Collaborative Data Processing Pipeline

genieBPC: Project GENIE BioPharma Collaborative Data Processing Pipeline

Description

The American Association Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) BioPharma Collaborative represents a multi-year, multi-institution effort to build a pan-cancer repository of linked clinico-genomic data. The genomic and clinical data are provided in multiple releases (separate releases for each cancer cohort with updates following data corrections), which are stored on the data sharing platform 'Synapse' https://www.synapse.org/. The 'genieBPC' package provides a seamless way to obtain the data corresponding to each release from 'Synapse' and to prepare datasets for analysis.

Author(s)

Maintainer: Jessica A. Lavery [e-mail] (ORCID)

Authors:

• Michael A. Curry (ORCID)

• Samantha Brown (ORCID)

• Karissa Whiting (ORCID)

• Hannah Fuchs (ORCID)

• Axel Martin

Other contributors:

• Daniel D. Sjoberg [e-mail] (ORCID) [contributor]

See Also

Useful links:

• https://genie-bpc.github.io/genieBPC/

• Report bugs at https://github.com/GENIE-BPC/genieBPC/issues

genieBPC documentation built on Sept. 11, 2024, 8:29 p.m.