drug_regimen_sunburst: Visualize drug regimen sequences in a sunburst plot

In genieBPC: Project GENIE BioPharma Collaborative Data Processing Pipeline

Visualize drug regimen sequences in a sunburst plot

Description

This function allows the user to visualize the complete treatment course for selected cancer diagnoses.

Usage

drug_regimen_sunburst(data_synapse, data_cohort, max_n_regimens = NULL, ...)

Arguments

data_synapse	The item from the nested list returned from 'pull_data_synapse()'
data_cohort	The list returned from the 'create_analytic_cohort()' function call
max_n_regimens	The maximum number of regimens displayed in the sunburst plot
...	Additional parameters passed to 'sunburstR::sunburst()'

Details

See the drug_regimen_sunburst vignette for additional details and examples.

Value

Returns data frame 'treatment_history' and interactive plot 'sunburst_plot'

Examples

# Example 1 ----------------------------------
# Example using package test data
# get clinico-genomic files for a specific cohort
nsclc_sub <- create_analytic_cohort(
  data_synapse = genieBPC::nsclc_test_data,
  stage_dx = c("Stage III", "Stage IV")
)

# create sunburst plot
ex1 <- drug_regimen_sunburst(
  data_synapse = nsclc_test_data,
  data_cohort = nsclc_sub,
  max_n_regimens = 3
)


# Example 2 ----------------------------------
# using pull_data_synapse
nsclc_2_0 <- pull_data_synapse("NSCLC", version = "v2.0-public")

nsclc_stg_iv <- create_analytic_cohort(
  data_synapse = nsclc_2_0$NSCLC_v2.0,
  stage = "Stage IV"
)

ex2 <- drug_regimen_sunburst(
  data_synapse = nsclc_2_0$NSCLC_v2.0,
  data_cohort = nsclc_stg_iv,
  max_n_regimens = 3
)

genieBPC documentation built on March 7, 2023, 6:46 p.m.