View source: R/drug_regimen_sunburst.R
drug_regimen_sunburst | R Documentation |
This function allows the user to visualize the complete treatment course for selected cancer diagnoses.
drug_regimen_sunburst(data_synapse, data_cohort, max_n_regimens = NULL, ...)
data_synapse |
The item from the nested list returned from 'pull_data_synapse()' |
data_cohort |
The list returned from the 'create_analytic_cohort()' function call |
max_n_regimens |
The maximum number of regimens displayed in the sunburst plot |
... |
Additional parameters passed to 'sunburstR::sunburst()' |
See the drug_regimen_sunburst vignette for additional details and examples.
Returns data frame 'treatment_history' and interactive plot 'sunburst_plot'
# Example 1 ----------------------------------
# Example using package test data
# get clinico-genomic files for a specific cohort
nsclc_sub <- create_analytic_cohort(
data_synapse = genieBPC::nsclc_test_data,
stage_dx = c("Stage III", "Stage IV")
)
# create sunburst plot
ex1 <- drug_regimen_sunburst(
data_synapse = nsclc_test_data,
data_cohort = nsclc_sub,
max_n_regimens = 3
)
# Example 2 ----------------------------------
# using pull_data_synapse
nsclc_2_0 <- pull_data_synapse("NSCLC", version = "v2.0-public")
nsclc_stg_iv <- create_analytic_cohort(
data_synapse = nsclc_2_0$NSCLC_v2.0,
stage = "Stage IV"
)
ex2 <- drug_regimen_sunburst(
data_synapse = nsclc_2_0$NSCLC_v2.0,
data_cohort = nsclc_stg_iv,
max_n_regimens = 3
)
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