geoBayes: Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods

Functions to fit geostatistical data. The data can be continuous, binary or count data and the models implemented are flexible. Conjugate priors are assumed on some parameters while inference on the other parameters can be done through a full Bayesian analysis of by empirical Bayes methods.

Author
Evangelos Evangelou <e.evangelou@maths.bath.ac.uk>, Vivekananda Roy <vroy@iastate.edu>
Date of publication
2015-11-16 08:27:36
Maintainer
Evangelos Evangelou <e.evangelou@maths.bath.ac.uk>
License
GPL (>= 2)
Version
0.3.3

View on CRAN

Man pages

bf1skel
Computation of Bayes factors at the skeleton points
bf2new
Compute the Bayes factors at new points
bf2optim
Empirical Bayes estimator
bfse
Computation of standard errors for Bayes factors
comparebinlinks
Compare two link functions for the binomial distribution
ebsglmm
Empirical Bayes estimation for SGLMM
ebstrga
Empirical Bayes estimation for the TGRFM
geoBayes
The 'geoBayes' package
linkfcn
Calculate the link function for exponential families
mcmcmake
Convert to an 'mcmc' object
mcsglmm
MCMC samples from the Spatial GLMM
mcstrga
MCMC samples from the transformed Gaussian model
mkpredgrid2d
Make prediction grid
plotbf2
Plot the estimated Bayes factors
rhizoctonia
Rhizoctonia root rot infections
stackdata
Combine 'data.frame's

Files in this package

geoBayes
geoBayes/src
geoBayes/src/Makevars
geoBayes/src/msg.c
geoBayes/src/flogsumexp.f90
geoBayes/src/bmargin.f90
geoBayes/src/auxfcns.c
geoBayes/src/msgmc.f90
geoBayes/src/llik.f90
geoBayes/src/lbfgsbmod.f90
geoBayes/src/linkfcn.f90
geoBayes/src/pdfy.f90
geoBayes/src/interfaces.f90
geoBayes/src/bfsp.f90
geoBayes/src/calcb2.f90
geoBayes/src/pdfw.f90
geoBayes/src/mcspz0.f90
geoBayes/src/mcsp2.f90
geoBayes/src/covfun.f90
geoBayes/src/betaprior.f90
geoBayes/NAMESPACE
geoBayes/demo
geoBayes/demo/rhizoctonia2.R
geoBayes/demo/rhizoctonia1.R
geoBayes/demo/yield3.R
geoBayes/demo/rhizoctonia5.R
geoBayes/demo/rhizoctonia3.R
geoBayes/demo/00Index
geoBayes/demo/yield4.R
geoBayes/demo/yield2.R
geoBayes/NEWS
geoBayes/data
geoBayes/data/rhizoctonia.rda
geoBayes/R
geoBayes/R/geoesteb.R
geoBayes/R/linkfcn.R
geoBayes/R/mcsp2.R
geoBayes/R/bfse.R
geoBayes/R/rhizoctonia-data.R
geoBayes/R/calcbf.R
geoBayes/R/comparebinlinks.R
geoBayes/R/bf.R
geoBayes/R/geobayes-package.R
geoBayes/R/util.R
geoBayes/MD5
geoBayes/DESCRIPTION
geoBayes/man
geoBayes/man/ebsglmm.Rd
geoBayes/man/bf2new.Rd
geoBayes/man/mcsglmm.Rd
geoBayes/man/comparebinlinks.Rd
geoBayes/man/mcstrga.Rd
geoBayes/man/stackdata.Rd
geoBayes/man/bf2optim.Rd
geoBayes/man/ebstrga.Rd
geoBayes/man/linkfcn.Rd
geoBayes/man/mcmcmake.Rd
geoBayes/man/plotbf2.Rd
geoBayes/man/bf1skel.Rd
geoBayes/man/mkpredgrid2d.Rd
geoBayes/man/geoBayes.Rd
geoBayes/man/rhizoctonia.Rd
geoBayes/man/bfse.Rd
geoBayes/.Rinstignore