R/xml.R

Defines functions f_write_XML write.xml

Documented in write.xml

#' Write XML File
#'
#' A function that allows the user to write an object into an .xml.
#'
#' @param object.function i.e. cube() or sphere()
#' @param filepath where you would like to save the file in quotes
#' @param title title of the file in quotes
#' @author Barret Schloerke
#' @keywords dynamic
write.xml <- function(object.function,filepath,title) {
  f_write_XML(
    dat1 = object.function$points,
    filename = filepath,
    data.num = sum(c(
      !is.null(object.function$points),
      !is.null(object.function$edges)
    )),
    data.name = title,
    dat1.name = "vertices",
    dat2 = object.function$edges,
    dat2.source = object.function$edges[,1],
    dat2.destination = object.function$edges[,2],
    dat2.name = "edges",
    default.color = "5"
  )
}

#' @keywords internal
f_write_XML <- function(dat1,filename,data.num=1,data.name="data",
  default.color="5",default.glyph="fc 2",catvars1=NULL,
  dat1.colors=NULL,dat1.glyphs=NULL,dat1.id=NULL,
  dat1.description=NULL,dat1.name="Data 1",
  dat2=NULL,catvars2=NULL,dat2.colors=NULL,dat2.glyphs=NULL,
    dat2.id=NULL,dat2.source=NULL,
    dat2.destination=NULL,dat2.description=NULL,dat2.name="Data 2",
  dat3=NULL,catvars3=NULL,dat3.colors=NULL,dat3.glyphs=NULL,
    dat3.id=NULL,dat3.description=NULL,dat3.name="Data 3")
{
# Write the header information
cat(sep="","<?xml version=\"1.0\"?>\n<!DOCTYPE ggobidata SYSTEM \"ggobi.dtd\">\n",file=filename)
cat(sep="","<ggobidata count=\"",data.num,"\">\n",file=filename,append=T)
cat(sep="","<data name=\"",dat1.name,"\">\n",file=filename,append=T)
cat(sep="","<description>\n",file=filename,append=T)
cat(sep="",dat1.description,"\n",file=filename,append=T)
cat(sep="","</description>\n",file=filename,append=T)
p1<-ncol(dat1)
n1<-nrow(dat1)
# cat(p1,n1,"\n")
var.name1<-colnames(dat1)
if (is.null(var.name1))
  for (i in 1:p1)
    var.name1<-c(var.name1,paste("Var ",i))
cat(sep="","<variables count=\"",p1,"\">\n",file=filename,append=T)
for (i in 1:p1) {
  if (is.factor(dat1[,i])) {
      l1<-length(levels(dat1[,i]))
      cat(sep="","  <categoricalvariable name=\"",var.name1[i],
        "\" >\n",file=filename,append=T)
      cat("    <levels count=\"",l1,"\" >\n",sep="",file=filename,append=T)
      for (j in 1:l1)
        cat("    <level value=\"",j,"\" >",levels(dat1[,i])[j],"</level>\n",
          sep="",file=filename,append=T)
      cat("    </levels>\n",file=filename,append=T)
      cat("  </categoricalvariable>\n",file=filename,append=T)
  }
  else if (i%in%catvars1) {
    cat(sep="","  <categoricalvariable name=\"",var.name1[i],
        "\" levels=\"auto\"/>\n",file=filename,append=T) # nolint
  }
  else {
    cat(sep="","  <realvariable name=\"",var.name1[i],"\"/>\n", # nolint
      file=filename,append=T)
  }
}
cat(sep="","</variables>\n",file=filename,append=T)
cat(sep="","<records count=\"",n1,"\" glyph=\"",default.glyph,
"\" color=\"",default.color,"\" >\n",file=filename,append=T)
row.name1<-rownames(dat1)
if (is.null(row.name1))
  row.name1<-c(1:n1)
if (is.null(dat1.id))
  dat1.id<-c(1:n1)
if (length(dat1.colors)!=n1) {
  if (!is.null(dat1.colors))
    cat("Length of data 1 colors vector is not the same as the number of rows.\n")
  dat1.colors<-rep(default.color,n1)
}
if (length(dat1.glyphs)!=n1) {
  if (!is.null(dat1.glyphs))
    cat("Length of data 1 glyphs vector is not the same as the number of rows.\n")
  dat1.glyphs<-rep(default.glyph,n1)
}
for(i in 1:n1)
{
   cat(sep="","<record id=\"",dat1.id[i],"\" label=\"",row.name1[i],
     "\" ",file=filename,append=T)
   cat(sep="","color=\"",dat1.colors[i],"\" ",file=filename,append=T)
   cat(sep="","glyph=\"",dat1.glyphs[i],"\"",file=filename,append=T)
   cat(sep="",">\n",file=filename,append=T)
   for (j in 1:p1)
     cat(dat1[i,j]," ",file=filename,append=T)
   cat(sep="","\n</record>\n",file=filename,append=T)
}
cat(sep="","</records>\n</data>\n",file=filename,append=T)

if (data.num > 1) {
# 2nd data
  p2<-ncol(dat2)
  n2<-nrow(dat2)
  var.name2<-colnames(dat2)
  if (is.null(var.name2)) {
    for (i in 1:p2) {
      var.name2<-c(var.name2,paste("Var ",i))
    }
  }
  cat(sep="","<data name=\"",dat2.name,"\">\n",file=filename,append=T)
  cat(sep="","<description>\n",file=filename,append=T)
  cat(sep="",dat2.description,"\n",file=filename,append=T)
  cat(sep="","</description>\n",file=filename,append=T)
  cat(sep="","<variables count=\"",p2,"\">\n",file=filename,append=T)
  for (i in 1:p2) {
    if (i%in%catvars2) {
      cat(sep="","<categoricalvariable name=\"",var.name2[i],
        "\" levels=\"auto\"/>\n",file=filename,append=T) # nolint
    }
    else
    cat(sep="","<realvariable name=\"",var.name2[i],"\"/>\n", # nolint
      file=filename,append=T)
  }
  cat(sep="","</variables>\n",file=filename,append=T)
  cat(sep="","<records count=\"",n2,"\" glyph=\"",default.glyph,
    "\" color=\"",default.color,"\">\n",file=filename,append=T)
  row.name2<-rownames(dat2)
  if (is.null(row.name2))
    row.name2<-c(1:n2)
  if (length(dat2.colors)<n2) {
    if (!is.null(dat2.colors))
      cat("Length of data 2 colors vector is not the same as the number of rows.\n")
    dat2.colors<-rep(default.color,n2)
  }
  if (length(dat2.glyphs)<n2) {
    if (!is.null(dat2.glyphs))
      cat("Length of data 2 glyphs vector is not the same as the number of rows.\n")
    dat2.glyphs<-rep(default.glyph,n2)
  }

  if (is.null(dat2.source)) {
    for(i in 1:n2) {
      cat(sep="","<record  label=\"",
        row.name2[i],"\" ",file=filename,append=T)
      cat(sep="","color=\"",dat2.colors[i],"\" ",file=filename,append=T)
      cat(sep="","glyph=\"",dat2.glyphs[i],"\"",file=filename,append=T)
      cat(sep="",">\n",file=filename,append=T)
      cat(sep=" ",dat2[i,],"\n",file=filename,append=T)
      cat(sep="","</record>\n",file=filename,append=T)
    }
    cat(sep="","</records>\n</data>\n",file=filename,append=T)
  } else {
    for(i in 1:n2)
    {
      cat(sep="","<record  source=\"",dat2.source[i],
        "\" destination=\"",dat2.destination[i],
        "\"  label=\"",row.name2[i],"\" ",file=filename,append=T)
      cat(sep="","color=\"",dat2.colors[i],"\" ",file=filename,append=T)
      cat(sep="","glyph=\"",dat2.glyphs[i],"\"",file=filename,append=T)
      cat(sep="",">\n",file=filename,append=T)
      cat(sep=" ",unlist(dat2[i,]),"\n",file=filename,append=T)
      cat(sep="","</record>\n",file=filename,append=T)
    }
    cat(sep="","</records>\n</data>\n",file=filename,append=T)
  }
}

# wrap-up file
cat(sep="","</ggobidata>",file=filename,append=T)
}

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geozoo documentation built on May 29, 2017, 5:58 p.m.