Man pages for ggPMX
'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models
| abbrev | Give the whole abbreviation definition |
| add_draft | Add draft layer annotation |
| check_shrink | Performs checks of names in shrink list |
| distrib | creates a graphic distribution object |
| eta_cov | This creates an ETA covariance matrix which can be used to... |
| eta_cov_plot | Eta Covariates plots |
| eta_distribution_plot | Eta distribution plots |
| eta_pairs | This creates an eta correlation which defines the... |
| eval_sym_parent_env | Try to evaluate a symbol in the parent frame (on errorr eturn... |
| get_abbrev | Get abbreviation definition by key |
| get_cats | Get category covariates |
| get_conts | Get continuous covariates |
| get_covariates | Get covariates variables |
| get_data | Get controller data set |
| get_occ | Get controller occasional covariates |
| get_plot | Get plot object |
| get_plot_config | Get the plot config by name |
| getPmxOption | Get ggPMX Option |
| get_strats | Get extra stratification variables |
| ggPMX | ggPMX: A ggplot2 toolbox for Nonlinear Mixed-Effect Model... |
| gtable_remove_grobs | Remove named elements from gtable |
| individual | This function can be used to obtain individual prediction and... |
| input_finegrid | Merge input and fingrid data sets |
| is.pmx_gpar | Check if an object is a pmx_gpar class |
| l_left_join | Merge 2 lists |
| load_config | Obtain the data source config |
| load_data_set | Load data set |
| load_source | Load all/or some source data set |
| n_pages | Determine the number of pages in a paginated facet plot |
| param_table | Creates parameter kable |
| parse_mlxtran | Parse MONOLIX mlxtran file |
| pk_occ | Creates pmx controller using monlix data having Occasional... |
| pk_pd | Creates pkpd pmx controller using package internal data |
| plot_names | Get plot names |
| plot_pmx | This is a generic plot method that produces all plots by... |
| plot_pmx.distrib | Plot EBE distribution |
| plot_pmx.eta_cov | This plots an ETA covariance matrix which can be used to... |
| plot_pmx.eta_pairs | Plot random effect correlation plot |
| plot_pmx.individual | This function can be used to plot individual prediction and... |
| plot_pmx.pmx_dens | This function plots EBE versus covariates using qq plots |
| plot_pmx.pmx_gpar | The ggPMX base plot function |
| plot_pmx.pmx_qq | This function plot EBE versus covariates using qq plots |
| plot_pmx.residual | This function plots residual for each observed value by... |
| plots | Get plots description |
| plot_shrink | Plot shrink in eta matric |
| pmx | Create a pmx object |
| pmx_bloq | Creates BLOQ object attributes |
| pmx_combine_tables | Combine tables |
| pmx_comp_shrink | Compute Shrinkage |
| pmx_config | This function can be used to define the pmx configuration... |
| pmx_copy | Creates a deep copy of the controller |
| pmx_cov | Select/Map covariates using human labels |
| pmx_dens | Creates a density plot object |
| pmx_endpoint | Creates pmx endpoint object |
| pmx_file_path | Generate clean file paths |
| pmx_filter | filter data in a pmx controller |
| pmx_get_configs | Get List of built-in configurations |
| pmx_get_extension | Get file extension |
| pmx_gpar | Handling pmx Graphical parameters |
| pmx_index_table | Index table columns |
| pmx_is.nm.table.list | Test for nm_table_list class |
| pmx_list_nm_tables | List NONMEM output tables |
| pmx_list_nm_tables_manual | Creates an nm_table_list from manually defined table name... |
| pmx_make_extension | Generate extension string |
| pmx_manual_nm_import | Manually define nonmem tables to be imported |
| pmx_merge_firstonly | Merge firstonly table with full length tables |
| pmx_msg | Message function |
| pmx_nlmixr | Creates pmx controller from an nlimxr fit object |
| pmx_nm | Creates pmx controller from NONMEM model outputs |
| pmxOptions | This function can be used to set ggPMX options |
| pmx_parse_nm_files | Parse NONMEM output files |
| pmx_plot | Generic pmx plot |
| pmx_plot_cats | Generic pmx stratified plot |
| pmx_plot_eta_matrix | Eta matrix plot |
| pmx_plot_individual | Individual plot |
| pmx_plot_iwres_dens | IWRES density plot |
| pmx_plot_vpc | VPC plot |
| pmx_qq | This function creates a qq plot object |
| pmx_qq_plot | Quantile-quantile plots |
| pmx_raw_to_tibble | Convert raw strings to tibble |
| pmx_read_args | Define data import arguments |
| pmx_read_funs | Define data import functions |
| pmx_read_nm_files | NONMEM output file import function |
| pmx_read_nm_model | NONMEM model file parser |
| pmx_read_nm_tables | NONMEM output table import function |
| pmx_register_plot | Register plot |
| pmx_report | Generates ggpmX report from a pre-defined template |
| pmx_report_template | Gets build-in report templates |
| pmx_settings | Create controller global settings |
| pmx_shrink | Create shrinkage parameter object |
| pmx_sim | Create simulation object |
| pmx_theme | Define ggPMX theme |
| pmx_tidyr_new_interface | Check tidyr version |
| pmx_update | Update plot object |
| pmx_update_extension | Update file extension |
| pmx_vpc | Creates vpc object |
| pmx_vpc_bin | Creates vpc bins |
| pmx_vpc_ci | Sets vpc confidence interval layer |
| pmx_vpc_obs | Sets vpc observation layer |
| pmx_vpc_pi | Sets vpc percentile layer |
| pmx_vpc_rug | Sets vpc rug layer |
| print.abbreviation | S3 print abbreviation |
| print.configs | This function can be used to print configuration of the... |
| print.pmxClass | Print pmxClass object |
| print.pmxConfig | S3 method print pmxConfig object |
| print.pmx_gpar | Print pmx_gpar object |
| read_extfile | Reads .ext files generated by NONMEM |
| read_input | Read Modelling input data |
| read_mlx_ind_est | Read MONOLIX individual parameters |
| read_mlx_par_est | Read MONOLIX parameter estimation file |
| read_mlx_pred | Read MONOLIX model predictions |
| reexports | Objects exported from other packages |
| residual | This function create a residual for each observed value and... |
| residual_scatter | Scatter residual plots |
| set_abbrev | update or add a new abbreviation |
| set_data | Set a controller data set |
| set_plot | Create a new plot of the desired type |
| sub-.pmx_gpar | Method for subsetting "pmx_gpar" objects |
| theophylline | Creates pmx controller using theophylline data |
| wrap_formula | merge facets formula with new formula |
