compare_sequence_analysis_results: Compare two gp3sequences analysis results

In gp3sequences: Transparent Analysis of Ordered Categorical Sequences

Compare two gp3sequences analysis results

Description

Compares structural contracts and recoverable provenance from two analysis objects. This helper is intended for regression checks, sensitivity analyses, and reproducibility audits; it does not select a statistically or substantively "best" analysis.

Usage

compare_sequence_analysis_results(
  x,
  y,
  tolerance = 1e-08,
  compare_values = FALSE
)

Arguments

x, y	Two analysis objects.
tolerance	Numerical comparison tolerance.
compare_values	Logical; when TRUE, also run all.equal() on the complete objects after structural comparison.

Value

An object of class gp3_sequence_analysis_comparison containing per-field comparisons, both audits, optional whole-object comparison, and an overall equality flag.

Examples

sequences <- data.frame(
  sequence_id = rep(c("s1", "s2", "s3"), each = 3L),
  sequence_order = rep(1:3, times = 3L),
  state = c(
    "A", "B", "C",
    "A", "B", "B",
    "C", "B", "A"
  )
)
d1 <- compute_sequence_distance(
  sequences,
  method = "levenshtein"
)
d2 <- compute_sequence_distance(
  sequences,
  method = "levenshtein"
)
compare_sequence_analysis_results(d1, d2)

gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.