gp3sequences
Transparent Analysis of Ordered Categorical Sequences

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gp3sequences: Transparent Analysis of Ordered Categorical Sequences
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API

API for gp3sequences
Transparent Analysis of Ordered Categorical Sequences

Global functions
.sequence_adv_data Source code
.sequence_adv_dijkstra Source code
.sequence_adv_distance_matrix Source code
.sequence_adv_edit_distance Source code
.sequence_adv_forward_backward Source code
.sequence_adv_graph_matrix Source code
.sequence_adv_group_key Source code
.sequence_adv_hmm_initialise Source code
.sequence_adv_hmm_input Source code
.sequence_adv_hmm_loglik Source code
.sequence_adv_hmm_sufficient Source code
.sequence_adv_lcs_length Source code
.sequence_adv_match_cols Source code
.sequence_adv_pair_grid Source code
.sequence_adv_require Source code
.sequence_adv_row_normalise Source code
.sequence_adv_scalar_character Source code
.sequence_adv_scalar_logical Source code
.sequence_adv_scalar_number Source code
.sequence_adv_seed Source code
.sequence_adv_silhouette Source code
.sequence_adv_state_order Source code
.sequence_adv_tie Source code
.sequence_adv_transition_profile Source code
.sequence_adv_unweighted_betweenness Source code
.sequence_adv_vector_normalise Source code
.sequence_adv_viterbi Source code
.sequence_adv_wide Source code
.sequence_adv_with_seed Source code
.sequence_adv_zero_column_frame Source code
.sequence_align_partition_labels Source code
.sequence_align_sequence_ids Source code
.sequence_align_state_levels Source code
.sequence_analysis_identifiers Source code
.sequence_analysis_method Source code
.sequence_analysis_provenance Source code
.sequence_analysis_seed Source code
.sequence_analysis_settings Source code
.sequence_analysis_state_levels Source code
.sequence_assert_character_vector Source code
.sequence_assert_column_argument Source code
.sequence_assert_flag Source code
.sequence_assert_output_names Source code
.sequence_assert_text_scalar Source code
.sequence_bind_frames Source code
.sequence_check_optional_backend Source code
.sequence_check_probability_simplex Source code
.sequence_check_seed Source code
.sequence_comparison_row Source code
.sequence_contract_bind_issues Source code
.sequence_contract_issue Source code
.sequence_contract_issue_table Source code
.sequence_contract_status Source code
.sequence_contract_version Source code
.sequence_empty_audit Source code
.sequence_empty_decisions Source code
.sequence_empty_state_by_sequence Source code
.sequence_empty_state_overall Source code
.sequence_empty_transition_by_sequence Source code
.sequence_empty_transition_overall Source code
.sequence_ext_base_colors Source code
.sequence_ext_covariate_hmm_input Source code
.sequence_ext_covariate_parameters Source code
.sequence_ext_covariate_probabilities Source code
.sequence_ext_difference Source code
.sequence_ext_entropy Source code
.sequence_ext_fit_softmax Source code
.sequence_ext_forward_backward Source code
.sequence_ext_multichannel_emission Source code
.sequence_ext_multichannel_initialise Source code
.sequence_ext_multichannel_input Source code
.sequence_ext_numeric_matrix Source code
.sequence_ext_permuted_groups Source code
.sequence_ext_sequence_metric Source code
.sequence_ext_softmax Source code
.sequence_ext_subsequence_present Source code
.sequence_ext_viterbi Source code
.sequence_installed_version Source code
.sequence_issue_row Source code
.sequence_mapping Source code
.sequence_mean_or_na Source code
.sequence_metadata_values Source code
.sequence_missing_value Source code
.sequence_motif_add_occurrence_index Source code
.sequence_motif_as_summary Source code
.sequence_motif_assert_lengths Source code
.sequence_motif_assert_motif_lengths Source code
.sequence_motif_assert_proportion Source code
.sequence_motif_assert_whole_number Source code
.sequence_motif_empty_by_sequence Source code
.sequence_motif_empty_dictionary Source code
.sequence_motif_empty_occurrences Source code
.sequence_motif_empty_overall Source code
.sequence_motif_empty_sequences Source code
.sequence_motif_group_factor Source code
.sequence_motif_make_id Source code
.sequence_motif_match_arg Source code
.sequence_motif_plot_data Source code
.sequence_motif_plot_empty Source code
.sequence_motif_plot_metric_label Source code
.sequence_motif_plot_selectors Source code
.sequence_motif_position_empty_occurrences Source code
.sequence_motif_position_empty_summary Source code
.sequence_motif_position_sort Source code
.sequence_motif_position_validate_by Source code
.sequence_motif_position_validate_summary Source code
.sequence_motif_position_values Source code
.sequence_motif_select_non_overlapping Source code
.sequence_motif_sort_overall Source code
.sequence_motif_validate_extraction Source code
.sequence_object_contract Source code
.sequence_object_family Source code
.sequence_package_version Source code
.sequence_prepare_result Source code
.sequence_record_provenance Source code
.sequence_restore_sequence_metadata Source code
.sequence_safe_proportion Source code
.sequence_sort_audit Source code
.sequence_stage_audit Source code
.sequence_status Source code
.sequence_sum_or_na Source code
.sequence_summary_input Source code
.sequence_test_case Source code
.sequence_validate_clustering_object Source code
.sequence_validate_distance_matrix Source code
.sequence_validate_hmm_object Source code
.sequence_validate_probability_matrix Source code
.sequence_validate_sequence_result Source code
.sequence_validate_transition_matrix Source code
.sequence_value_text Source code
as_arules_sequences Man page Source code
as_grpstring_data Man page Source code
as_igraph_transition_network Man page Source code
as_seqhmm_sequences Man page Source code
as_traminer_sequences Man page Source code
audit_sequence_analysis Man page Source code
audit_sequence_data Man page Source code
bootstrap_sequence_clusters Man page Source code
bootstrap_sequence_group_difference Man page Source code
bootstrap_transition_network Man page Source code
cluster_sequences Man page Source code
compare_sequence_analysis_results Man page Source code
compare_sequence_groups Man page Source code
compare_sequence_hmms Man page Source code
compare_sequence_panel_changes Man page Source code
compare_sequence_subsequences Man page Source code
compute_sequence_distance Man page Source code
create_consensus_sequence Man page Source code
create_sequence_cluster_ensemble Man page Source code
create_transition_network Man page Source code
declare_sequence_comparison_design Man page Source code
decode_covariate_sequence_states Man page Source code
decode_multichannel_sequence_states Man page Source code
decode_sequence_states Man page Source code
detect_transition_communities Man page Source code
encode_sequence_data Man page Source code
extract_representative_sequences Man page Source code
extract_sequence_ngrams Man page Source code
extract_sequence_subsequences Man page Source code
filter_sequence_motifs Man page Source code
filter_sequence_subsequences Man page Source code
fit_covariate_sequence_hmm Man page Source code
fit_higher_order_transition_model Man page Source code
fit_multichannel_sequence_hmm Man page Source code
fit_sequence_hmm Man page Source code
fit_sequence_hmm_mixture Man page Source code
fit_time_varying_sequence_model Man page Source code
format_consensus_sequence Man page Source code
format_sequence_motif_positions Man page Source code
format_sequence_motifs Man page Source code
format_sequence_paths Man page Source code
gp3sequences Man page
gp3sequences-package Man page
plot_consensus_sequence Man page Source code
plot_multichannel_sequence_hmm Man page Source code
plot_sequence_cluster_silhouette Man page Source code
plot_sequence_distance_heatmap Man page Source code
plot_sequence_entropy Man page Source code
plot_sequence_group_comparison Man page Source code
plot_sequence_group_inference Man page Source code
plot_sequence_index Man page Source code
plot_sequence_motif_positions Man page Source code
plot_sequence_motifs Man page Source code
plot_sequence_panel_changes Man page Source code
plot_sequence_state_distribution Man page Source code
plot_sequence_subsequences Man page Source code
plot_time_varying_sequence_model Man page Source code
plot_transition_network Man page Source code
predict_covariate_transition_probabilities Man page Source code
predict_next_state Man page Source code
predict_time_varying_sequence_model Man page Source code
prepare_gp3tools_sequences Man page Source code
prepare_sequence_data Man page Source code
prepare_sequence_panel Man page Source code
sequence_capabilities Man page Source code
summarise_consensus_agreement Man page Source code
summarise_covariate_sequence_hmm Man page Source code
summarise_multichannel_sequence_hmm Man page Source code
summarise_sequence_cluster_stability Man page Source code
summarise_sequence_distance Man page Source code
summarise_sequence_group_inference Man page Source code
summarise_sequence_hmm Man page Source code
summarise_sequence_motif_positions Man page Source code
summarise_sequence_motifs Man page Source code
summarise_sequence_panel Man page Source code
summarise_sequence_states Man page Source code
summarise_sequence_subsequences Man page Source code
summarise_sequence_transitions Man page Source code
summarise_time_varying_sequence_model Man page Source code
summarise_transition_centrality Man page Source code
test_sequence_group_difference Man page Source code
validate_sequence_clusters Man page Source code
validate_sequence_data Man page Source code
gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.

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