plot_consensus_sequence: Plot a consensus sequence

In gp3sequences: Transparent Analysis of Ordered Categorical Sequences

Plot a consensus sequence

Description

Plot a consensus sequence

Usage

plot_consensus_sequence(
  consensus,
  type = c("agreement", "states"),
  group = NULL,
  main = NULL,
  xlab = "Sequence position",
  ylab = NULL,
  ...
)

Arguments

consensus	A consensus result.
type	"agreement" or "states".
group	Optional group value, encoded group key, or named list of values when grouped consensus was created. It is required when more than one consensus group is present.
main, xlab, ylab	Plot labels.
...	Additional arguments passed to base graphics.

Value

The plotted data, invisibly.

Examples

sequences <- data.frame(
  sequence_id = rep(c("s1", "s2", "s3", "s4"), each = 4L),
  sequence_order = rep(1:4, times = 4L),
  state = c("A", "B", "C", "D", "A", "B", "C", "C",
            "D", "C", "B", "A", "D", "C", "A", "A"),
  group = rep(c("g1", "g2"), each = 8L),
  stringsAsFactors = FALSE
)
consensus <- create_consensus_sequence(sequences)
plot_consensus_sequence(consensus)

gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.