filter_sequence_subsequences: Filter non-contiguous subsequence summaries

In gp3sequences: Transparent Analysis of Ordered Categorical Sequences

Filter non-contiguous subsequence summaries

Description

Filter non-contiguous subsequence summaries

Usage

filter_sequence_subsequences(
  summary,
  min_sequences = 1L,
  min_prevalence = 0,
  max_mean_gap = Inf,
  top_n = NULL,
  ties = c("include", "exclude")
)

Arguments

summary	A data frame from summarise_sequence_subsequences().
min_sequences	Minimum sequence count.
min_prevalence	Minimum sequence prevalence.
max_mean_gap	Optional maximum mean gap.
top_n	Optional number of rows retained after deterministic sorting.
ties	Include or exclude ties at the top_n boundary.

Value

A filtered summary data frame.

Examples

data <- data.frame(sequence_id = rep(c("a", "b"), each = 4L),
                   sequence_order = rep(1:4, 2L),
                   state = c("A", "B", "C", "D", "A", "C", "B", "D"))
x <- summarise_sequence_subsequences(extract_sequence_subsequences(data))
filter_sequence_subsequences(x, min_sequences = 2L)

gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.