Files in gp3sequences

Transparent Analysis of Ordered Categorical Sequences

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/sequence-motif-visualisation.R R/sequence-inference.R R/sequence-contracts.R R/sequence-time-models.R R/sequence-extension-internals.R R/sequence-adapters.R R/sequence-motifs.R R/sequence-panel.R R/sequence-visualisations-extended.R R/sequence-capabilities.R R/sequence-data.R R/sequence-covariate-hmm.R R/sequence-test-cases.R R/gp3sequences-package.R R/sequence-advanced-internals.R R/sequence-networks.R R/sequence-distances-clustering.R R/sequence-subsequences.R R/sequence-multichannel-hmm.R R/sequence-consensus-groups.R R/sequence-latent-models.R R/sequence-encoding-summaries.R R/sequence-analysis-audit.R

inst/CITATION

inst/doc/extended-sequence-visualisations.Rmd

inst/doc/time-varying-condition-models.html

inst/doc/sequence-inference-and-randomization.Rmd inst/doc/time-varying-condition-models.R

inst/doc/multichannel-and-covariate-hmms.html

inst/doc/consensus-and-group-comparisons.R inst/doc/getting-started-with-gp3sequences.Rmd inst/doc/transition-networks-and-higher-order-models.R

inst/doc/longitudinal-panel-sequences.html

inst/doc/extended-sequence-visualisations.html

inst/doc/noncontiguous-subsequence-mining.Rmd inst/doc/distances-clustering-and-stability.R

inst/doc/choosing-a-sequence-analysis-method.html

inst/doc/contiguous-motif-workflow.R inst/doc/contiguous-motif-workflow.Rmd inst/doc/noncontiguous-subsequence-mining.R

inst/doc/getting-started-with-gp3sequences.html

inst/doc/sequence-data-validation-and-preparation.R

inst/doc/transition-networks-and-higher-order-models.html

inst/doc/contiguous-motif-workflow.html

inst/doc/consensus-and-group-comparisons.html

inst/doc/latent-models-and-optional-adapters.html

inst/doc/multichannel-and-covariate-hmms.R inst/doc/reproducible-sequence-analysis-case-study.R inst/doc/multichannel-and-covariate-hmms.Rmd

inst/doc/noncontiguous-subsequence-mining.html

inst/doc/sequence-data-validation-and-preparation.html

inst/doc/sequence-data-validation-and-preparation.Rmd inst/doc/extended-sequence-visualisations.R inst/doc/reproducible-sequence-analysis-case-study.Rmd

inst/doc/reproducible-sequence-analysis-case-study.html

inst/doc/latent-models-and-optional-adapters.R inst/doc/consensus-and-group-comparisons.Rmd inst/doc/choosing-a-sequence-analysis-method.Rmd inst/doc/longitudinal-panel-sequences.R inst/doc/sequence-inference-and-randomization.R

inst/doc/distances-clustering-and-stability.html

inst/doc/choosing-a-sequence-analysis-method.R inst/doc/latent-models-and-optional-adapters.Rmd inst/doc/getting-started-with-gp3sequences.R

inst/doc/sequence-inference-and-randomization.html

inst/doc/time-varying-condition-models.Rmd inst/doc/transition-networks-and-higher-order-models.Rmd inst/doc/longitudinal-panel-sequences.Rmd inst/doc/distances-clustering-and-stability.Rmd

inst/validation/gp3sequences-validation.csv

build/vignette.rds

tests/testthat.R tests/testthat/test-sequence-subsequences.R tests/testthat/test-sequence-time-models.R tests/testthat/test-capabilities.R tests/testthat/test-sequence-panel.R tests/testthat/test-sequence-distances-clustering.R tests/testthat/test-contract-invariants.R tests/testthat/test-sequence-motif-visualisation.R tests/testthat/test-adversarial-inputs.R tests/testthat/test-sequence-encoding-summaries.R tests/testthat/test-sequence-adapters.R tests/testthat/test-metamorphic-invariants.R tests/testthat/test-sequence-latent-models.R tests/testthat/test-sequence-consensus-groups.R tests/testthat/test-sequence-data.R tests/testthat/test-sequence-covariate-hmm.R tests/testthat/test-sequence-visualisations-extended.R tests/testthat/test-sequence-inference.R tests/testthat/test-package.R tests/testthat/helper-advanced-sequences.R tests/testthat/test-analysis-audit.R tests/testthat/test-sequence-networks.R tests/testthat/helper-sequence-extensions.R tests/testthat/test-sequence-multichannel-hmm.R tests/testthat/test-sequence-motifs.R vignettes/extended-sequence-visualisations.Rmd vignettes/sequence-inference-and-randomization.Rmd vignettes/getting-started-with-gp3sequences.Rmd vignettes/noncontiguous-subsequence-mining.Rmd vignettes/contiguous-motif-workflow.Rmd vignettes/multichannel-and-covariate-hmms.Rmd vignettes/sequence-data-validation-and-preparation.Rmd vignettes/reproducible-sequence-analysis-case-study.Rmd vignettes/consensus-and-group-comparisons.Rmd vignettes/choosing-a-sequence-analysis-method.Rmd vignettes/latent-models-and-optional-adapters.Rmd vignettes/time-varying-condition-models.Rmd vignettes/transition-networks-and-higher-order-models.Rmd vignettes/longitudinal-panel-sequences.Rmd vignettes/distances-clustering-and-stability.Rmd man/create_transition_network.Rd man/bootstrap_transition_network.Rd man/predict_covariate_transition_probabilities.Rd man/extract_sequence_ngrams.Rd man/summarise_time_varying_sequence_model.Rd man/cluster_sequences.Rd man/plot_sequence_group_comparison.Rd man/summarise_sequence_subsequences.Rd man/summarise_sequence_distance.Rd man/validate_sequence_data.Rd man/summarise_covariate_sequence_hmm.Rd man/format_sequence_motif_positions.Rd man/summarise_sequence_group_inference.Rd man/validate_sequence_clusters.Rd man/filter_sequence_motifs.Rd man/create_consensus_sequence.Rd man/summarise_sequence_cluster_stability.Rd man/compare_sequence_panel_changes.Rd man/as_igraph_transition_network.Rd man/compare_sequence_hmms.Rd man/plot_sequence_distance_heatmap.Rd man/compare_sequence_analysis_results.Rd man/summarise_sequence_motif_positions.Rd man/as_arules_sequences.Rd man/compare_sequence_groups.Rd man/compute_sequence_distance.Rd man/summarise_sequence_states.Rd man/fit_sequence_hmm_mixture.Rd man/audit_sequence_analysis.Rd man/summarise_transition_centrality.Rd man/summarise_sequence_motifs.Rd man/plot_time_varying_sequence_model.Rd man/predict_next_state.Rd man/summarise_sequence_transitions.Rd man/fit_sequence_hmm.Rd man/summarise_sequence_hmm.Rd man/format_sequence_motifs.Rd man/extract_representative_sequences.Rd man/plot_transition_network.Rd man/gp3sequences-package.Rd man/plot_sequence_entropy.Rd man/decode_multichannel_sequence_states.Rd man/decode_sequence_states.Rd man/plot_sequence_motifs.Rd man/fit_time_varying_sequence_model.Rd man/summarise_consensus_agreement.Rd man/plot_sequence_cluster_silhouette.Rd man/audit_sequence_data.Rd man/summarise_sequence_panel.Rd man/plot_sequence_motif_positions.Rd man/fit_covariate_sequence_hmm.Rd man/encode_sequence_data.Rd man/plot_consensus_sequence.Rd man/filter_sequence_subsequences.Rd man/fit_higher_order_transition_model.Rd man/plot_sequence_state_distribution.Rd man/fit_multichannel_sequence_hmm.Rd man/as_grpstring_data.Rd man/as_traminer_sequences.Rd man/plot_sequence_subsequences.Rd man/bootstrap_sequence_clusters.Rd man/prepare_sequence_panel.Rd man/create_sequence_cluster_ensemble.Rd man/prepare_gp3tools_sequences.Rd man/format_consensus_sequence.Rd man/detect_transition_communities.Rd man/sequence_capabilities.Rd man/declare_sequence_comparison_design.Rd man/as_seqhmm_sequences.Rd man/decode_covariate_sequence_states.Rd man/plot_multichannel_sequence_hmm.Rd man/format_sequence_paths.Rd man/prepare_sequence_data.Rd man/predict_time_varying_sequence_model.Rd man/bootstrap_sequence_group_difference.Rd man/plot_sequence_panel_changes.Rd man/plot_sequence_index.Rd man/plot_sequence_group_inference.Rd man/summarise_multichannel_sequence_hmm.Rd man/test_sequence_group_difference.Rd man/extract_sequence_subsequences.Rd man/compare_sequence_subsequences.Rd

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gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.