plot_sequence_state_distribution: Plot state distributions over aligned positions

In gp3sequences: Transparent Analysis of Ordered Categorical Sequences

Plot state distributions over aligned positions

Description

Plot state distributions over aligned positions

Usage

plot_sequence_state_distribution(
  data,
  sequence_id_col = "sequence_id",
  order_col = "sequence_order",
  state_col = "state",
  proportion = TRUE,
  state_levels = NULL,
  palette = "Dark 3",
  ...
)

Arguments

data	Long-format sequence data or a prepared result.
sequence_id_col, order_col, state_col	Core sequence columns.
proportion	Plot position-wise proportions rather than counts.
state_levels	Optional state ordering.
palette	Base HCL palette.
...	Additional arguments passed to graphics::matplot().

Value

A position-by-state matrix, invisibly.

Examples

data <- data.frame(sequence_id = rep(c("a", "b"), each = 4L),
                   sequence_order = rep(1:4, 2L),
                   state = c("A", "B", "C", "D", "A", "C", "C", "D"))
plot_sequence_state_distribution(data)

gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.