summarise_sequence_cluster_stability: Summarise sequence-cluster stability

In gp3sequences: Transparent Analysis of Ordered Categorical Sequences

Summarise sequence-cluster stability

Description

Summarise sequence-cluster stability

Usage

summarise_sequence_cluster_stability(bootstrap, threshold = 0.8)

Arguments

bootstrap	A result from bootstrap_sequence_clusters().
threshold	Pairwise stability threshold.

Value

Overall, cluster-level, and low-stability pair summaries.

Examples

sequences <- data.frame(
  sequence_id = rep(c("s1", "s2", "s3", "s4"), each = 4L),
  sequence_order = rep(1:4, times = 4L),
  state = c("A", "B", "C", "D", "A", "B", "C", "C",
            "D", "C", "B", "A", "D", "C", "A", "A"),
  group = rep(c("g1", "g2"), each = 8L),
  stringsAsFactors = FALSE
)
distance <- compute_sequence_distance(sequences)
boot <- bootstrap_sequence_clusters(distance, k = 2L, n_boot = 5L)
summarise_sequence_cluster_stability(boot)

gp3sequences documentation built on Aug. 23, 2026, 5:10 p.m.