Man pages for gphmm
Generalized Pair Hidden Markov Chain Model for Sequence Alignment
| calculategphmm | Calculate GPHMM probability. |
| computeCounts | Compute counts for emissions and transitions. |
| computegphmm | Compute GPHMM log probability. |
| computeGphmmParam | Compute gphmm parameters from counts. |
| generateRandomSequences | Split randomly any R object for which method length() has... |
| generateRead | Generate a noisy read from a true sequence. |
| initializeGphmm | Initial parameters for gphmm. |
| makeGphmmPerRead | Create a function to compute gphmm probabilities during the... |
