Man pages for gphmm
Generalized Pair Hidden Markov Chain Model for Sequence Alignment

calculategphmmCalculate GPHMM probability.
computeCountsCompute counts for emissions and transitions.
computegphmmCompute GPHMM log probability.
computeGphmmParamCompute gphmm parameters from counts.
generateRandomSequencesSplit randomly any R object for which method length() has...
generateReadGenerate a noisy read from a true sequence.
initializeGphmmInitial parameters for gphmm.
makeGphmmPerReadCreate a function to compute gphmm probabilities during the...
gphmm documentation built on Oct. 2, 2017, 5:03 p.m.