|calculategphmm||Calculate GPHMM probability.|
|computeCounts||Compute counts for emissions and transitions.|
|computegphmm||Compute GPHMM log probability.|
|computeGphmmParam||Compute gphmm parameters from counts.|
|generateRandomSequences||Split randomly any R object for which method length() has...|
|generateRead||Generate a noisy read from a true sequence.|
|initializeGphmm||Initial parameters for gphmm.|
|makeGphmmPerRead||Create a function to compute gphmm probabilities during the...|
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