Description Usage Arguments Examples
makeGphmmPerRead
returns a function to compute gphmm probabilities for each row of the csv file.
1 | makeGphmmPerRead(seqs, csv)
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seqs |
- DNAStringSet with DNA sequences used for the training. |
csv |
- data.frame with first column = queries, second column = reference sequences, third column = qv |
1 2 3 4 | library(Biostrings)
seqs <- DNAStringSet(c(a='ATGC', b = 'ATGG', c = 'ATGT'))
csv <- data.frame(queries = c('a', 'b'), refs = c('c', 'c'))
makeGphmmPerRead(seqs, csv)
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