generateRead: Generate a noisy read from a true sequence.
In gphmm: Generalized Pair Hidden Markov Chain Model for Sequence Alignment

generateRead returns a list with the noisy read, the true sequence, the path, and the phred quality score.

1 2	generateRead(seq = "ATGCGGATCG", qv = NULL, seed = NULL, paramgphmm = initializeGphmm())

`seq`	- character vector of true sequence.
`qv`	- integer, wanted phred quality score for the read.
`seed`	- integer, seed for reproducibility.
`paramgphmm`	- list of parameters.

1 2	generateRead('ACGTGCA') generateRead('ACGTGCA', qv = 10, seed = 1416)

gphmm documentation built on Oct. 2, 2017, 5:03 p.m.

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