PlotGeneGroupsBars: Plot gene values as bars

In grandR: Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Plot gene values as bars

Description

Plot old and new RNA of a gene in a row.

Usage

PlotGeneGroupsBars(
  data,
  gene,
  slot = DefaultSlot(data),
  columns = NULL,
  show.CI = FALSE,
  xlab = NULL,
  transform = NULL
)

Arguments

data	the grandR object to get the data to be plotted from
gene	the gene to plot
slot	the slot of the grandR object to get the data from
columns	which columns (i.e. samples or cells) to show (see details)
show.CI	show confidence intervals; one of TRUE/FALSE (default: FALSE)
xlab	The names to show at the x axis;
transform	function that is called on the data frame directly before plotting (can be NULL)

Details

xlab can be given as a character vector or an expression that evaluates into a character vector. The expression is evaluated in an environment having the Coldata, i.e. you can use names of Coldata as variables to conveniently it.

Columns can be given as a logical, integer or character vector representing a selection of the columns (samples or cells). The expression is evaluated in an environment having the Coldata, i.e. you can use names of Coldata as variables to conveniently build a logical vector (e.g., columns=Condition=="x").

Value

a ggplot object.

See Also

GetData, PlotGeneTotalVsNtr,PlotGeneOldVsNew,PlotGeneGroupsBars

grandR documentation built on April 4, 2025, 2:27 a.m.