grofit: The package was developed to fit fit many growth curves obtained under different conditions.
Version 1.1.1-1

The package was developed to fit fit many growth curves obtained under different conditions in order to derive a conclusive dose-response curve, for instance for a compound that potentially affects growth. grofit fits data to different parametric models (function gcFitModel) and in addition provides a model free spline fit (function gcFitSpline) to circumvent systematic errors that might occur within application of parametric methods.

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AuthorMatthias Kahm, Maik Kschischo
Date of publication2014-10-06 15:21:13
MaintainerBilly Aung Myint <r@use-r.com>
LicenseGPL-2
Version1.1.1-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("grofit")

Man pages

drBootSpline: Function to create a bootstrap sample of splines fitted to...
drFit: Function to run the dose-response curve fit and EC50...
drFitSpline: Function to fit smoothed splines to dose reponse data.
gcBootSpline: Function to generate a bootstrap sample from a dataset of...
gcFit: Function to run growth curve fitting on several data sets...
gcFitModel: Function to fit parametric models to growth data.
gcFitSpline: Function to fit smoothed splines to growth data.
gompertz: Gompertz growth law
gompertz.exp: Modified Gompertz growth law
grofit: Standard workflow
grofit.control: Function to set all available grofit options
grofit.data: Example of growth data
grofit-package: The package was developd to fit fit many growth curves...
grofit.time: Example of growth data.
initgompertz: Function to generate initial values for parameter estimation
initgompertz.exp: Function to generate initial values for parameter estimation
initlogistic: Function to generate initial values for parameter estimation
initrichards: Function to generate initial values for parameter estimation
logistic: Logistic growth law
low.integrate: Function to estimate the area under a curve given as...
plot.drBootSpline: Generic plot function for drBootSpline objects
plot.drFit: Generic plot function for drFit objects
plot.drFitSpline: Generic plot function for drFitSpline objects
plot.gcBootSpline: Generic plot function for gcBootSpline objects
plot.gcFit: Generic plot function for gcFit objects
plot.gcFitModel: Generic plot function for gcFitModel objects
plot.gcFitSpline: Generic plot function for gcFitSpline objects
ran.data: Function to generate example data for grofit
richards: Richards growth law
summary.drBootSpline: Generic summary function for drBootSpline object
summary.drFit: Generic summary function for drFit object
summary.drFitSpline: Generic summary function for drFitSpline object
summary.gcBootSpline: Generic summary function for gcBootSpline object
summary.gcFit: Generic summary function for gcFit object
summary.gcFitModel: Generic summary function for gcFitModel object
summary.gcFitSpline: Generic summary function for gcFitSpline object

Functions

drBootSpline Man page Source code
drFit Man page Source code
drFitSpline Man page Source code
gcBootSpline Man page Source code
gcFit Man page Source code
gcFitModel Man page Source code
gcFitSpline Man page Source code
gompertz Man page Source code
gompertz.exp Man page Source code
grofit Man page Source code
grofit-package Man page
grofit.control Man page Source code
grofit.data Man page
grofit.time Man page
initgompertz Man page Source code
initgompertz.exp Man page Source code
initlogistic Man page Source code
initrichards Man page Source code
logistic Man page Source code
low.integrate Man page Source code
plot.drBootSpline Man page Source code
plot.drFit Man page Source code
plot.drFitSpline Man page Source code
plot.gcBootSpline Man page Source code
plot.gcFit Man page Source code
plot.gcFitModel Man page Source code
plot.gcFitSpline Man page Source code
ran.data Man page Source code
richards Man page Source code
summary.drBootSpline Man page Source code
summary.drFit Man page Source code
summary.drFitSpline Man page Source code
summary.gcBootSpline Man page Source code
summary.gcFit Man page Source code
summary.gcFitModel Man page Source code
summary.gcFitSpline Man page Source code

Files

inst
inst/CITATION
NAMESPACE
data
data/grofit.data.rda
data/grofit.time.rda
R
R/drBootSpline.R
R/gcBootSpline.R
R/richards.R
R/gcFitModel.R
R/initlogistic.R
R/drFitSpline.R
R/plot.gcFit.R
R/summary.gcFit.R
R/initgompertz.R
R/summary.drBootSpline.R
R/plot.drFitSpline.R
R/gompertz.R
R/plot.drFit.R
R/plot.gcFitSpline.R
R/summary.drFit.R
R/grofit.control.R
R/drFit.R
R/initgompertz.exp.R
R/summary.gcFitSpline.R
R/plot.gcFitModel.R
R/low.integrate.R
R/plot.drBootSpline.R
R/gcFitSpline.R
R/plot.gcBootSpline.R
R/logistic.R
R/summary.gcBootSpline.R
R/summary.gcFitModel.R
R/ran.data.R
R/initrichards.R
R/summary.drFitSpline.R
R/grofit.R
R/gompertz.exp.R
R/gcFit.R
MD5
DESCRIPTION
man
man/initrichards.Rd
man/gcBootSpline.Rd
man/grofit-package.Rd
man/grofit.data.Rd
man/grofit.control.Rd
man/ran.data.Rd
man/summary.drFitSpline.Rd
man/grofit.time.Rd
man/summary.drBootSpline.Rd
man/gompertz.Rd
man/drFitSpline.Rd
man/gcFitModel.Rd
man/summary.gcFitModel.Rd
man/drFit.Rd
man/drBootSpline.Rd
man/initgompertz.Rd
man/logistic.Rd
man/initlogistic.Rd
man/plot.drFitSpline.Rd
man/plot.drBootSpline.Rd
man/plot.gcFitModel.Rd
man/plot.gcFit.Rd
man/initgompertz.exp.Rd
man/richards.Rd
man/grofit.Rd
man/plot.drFit.Rd
man/gcFit.Rd
man/summary.gcFitSpline.Rd
man/plot.gcBootSpline.Rd
man/low.integrate.Rd
man/gompertz.exp.Rd
man/plot.gcFitSpline.Rd
man/summary.gcBootSpline.Rd
man/summary.gcFit.Rd
man/gcFitSpline.Rd
man/summary.drFit.Rd
grofit documentation built on May 20, 2017, 1:50 a.m.