grofit: Standard workflow

In grofit: The package was developed to fit fit many growth curves obtained under different conditions.

Description

The function enables the user to run all features of the grofit package as a standard workflow. First several growth curves are fitted by usage of the function gcFit. Afterwards respecting dose-response curves are estimated from by the function drFit.

Usage

grofit(time, data, ec50 = FALSE, control = grofit.control())

Arguments

time	Numeric matrix, consisting of n columns for the time points and m rows for the different experiments.
data	Data frame consisting of 3+n columns, containing three coulumns of additional information and n columns of growth data corresponding to time. 1. column, character as an experiment identifier; 2. column: character, additional information about respecting experiment; 3. column: concentration of substrate of a compound under which the experiment is obtained; 4.-(n+3). column: growth data corresponding to the time points in time.
ec50	Logical, indicating wether dose-response curves and EC50 should be estimated after the growth curve fit.
control	Object of class grofit.control containing a list of options specified by grofit.control.

Value

time	Numeric matrix, equivalent to input parameter time.
data	Data frame, equivalent to input parameter data.
gcFit	Object of class gcFit.
drFit	Object of class drFit.
control	Object of class grofit.control containing a list of options passed to the function as control.

See Also

grofit.time, grofit.data

grofit documentation built on May 30, 2017, 4:08 a.m.