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tests/testthat/_snaps/tbl_stack.md
In gtsummary: Presentation-Ready Data Summary and Analytic Result Tables
Stacking tbl_regression objects
Code
tbl_stack(list(t1, t2), group_header = c("Group 1", "Group 2")) %>%
as.data.frame()
Output
**Group** **Characteristic** **OR** **95% CI** **p-value**
1 Group 1 Treatment (unadjusted) <NA> <NA> <NA>
2 <NA> Drug A <NA> <NA> <NA>
3 <NA> Drug B 1.21 0.66, 2.24 0.5
4 Group 2 Treatment (adjusted) <NA> <NA> <NA>
5 <NA> Drug A <NA> <NA> <NA>
6 <NA> Drug B 1.48 0.78, 2.86 0.2
Stacking tbl_merge objects
Code
tbl_stack(list(row1, row2)) %>% as.data.frame()
Message
i Column headers among stacked tables differ. Headers from the first table are
used. Use `quiet = TRUE` to suppress this message.
Output
**Characteristic** **OR** **95% CI** **p-value** **HR** **95% CI**
1 Treatment (unadjusted) <NA> <NA> <NA> <NA> <NA>
2 Drug A <NA> <NA> <NA> <NA> <NA>
3 Drug B 1.21 0.66, 2.24 0.5 1.25 0.86, 1.81
4 Treatment (adjusted) <NA> <NA> <NA> <NA> <NA>
5 Drug A <NA> <NA> <NA> <NA> <NA>
6 Drug B 1.48 0.78, 2.86 0.2 1.30 0.88, 1.92
**p-value**
1 <NA>
2 <NA>
3 0.2
4 <NA>
5 <NA>
6 0.2
Stacking tbl_summary objects
Code
zz %>% as.data.frame()
Output
**Characteristic** **0**, N = 132 **1**, N = 61 **p-value**
1 Chemotherapy Treatment <NA> <NA> 0.5
2 Drug A 67 (51%) 28 (46%) <NA>
3 Drug B 65 (49%) 33 (54%) <NA>
4 Age 46 (36, 55) 49 (43, 59) 0.091
5 Unknown 7 3 <NA>
6 Marker Level (ng/mL) 0.59 (0.21, 1.24) 0.98 (0.31, 1.53) 0.10
7 Unknown 6 4 <NA>
8 T Stage <NA> <NA> 0.6
9 T1 34 (26%) 18 (30%) <NA>
10 T2 39 (30%) 13 (21%) <NA>
11 T3 25 (19%) 15 (25%) <NA>
12 T4 34 (26%) 15 (25%) <NA>
13 Grade <NA> <NA> >0.9
14 I 46 (35%) 21 (34%) <NA>
15 II 44 (33%) 19 (31%) <NA>
16 III 42 (32%) 21 (34%) <NA>
17 Patient Died 83 (63%) 24 (39%) 0.002
18 Months to Death/Censor 20.6 (15.0, 24.0) 24.0 (18.4, 24.0) 0.001
19 Age 46 (37, 59) 48 (39, 56) 0.7
20 Unknown 7 4 <NA>
21 Marker Level (ng/mL) 0.84 (0.24, 1.57) 0.52 (0.19, 1.20) 0.085
22 Unknown 6 4 <NA>
23 T Stage <NA> <NA> 0.9
24 T1 28 (29%) 25 (25%) <NA>
25 T2 25 (26%) 29 (28%) <NA>
26 T3 22 (22%) 21 (21%) <NA>
27 T4 23 (23%) 27 (26%) <NA>
28 Grade <NA> <NA> 0.9
29 I 35 (36%) 33 (32%) <NA>
30 II 32 (33%) 36 (35%) <NA>
31 III 31 (32%) 33 (32%) <NA>
32 Tumor Response 28 (29%) 33 (34%) 0.5
33 Unknown 3 4 <NA>
34 Patient Died 52 (53%) 60 (59%) 0.4
35 Months to Death/Censor 23.5 (17.4, 24.0) 21.2 (14.6, 24.0) 0.14
**q-value**
1 0.7
2 <NA>
3 <NA>
4 0.2
5 <NA>
6 0.2
7 <NA>
8 0.7
9 <NA>
10 <NA>
11 <NA>
12 <NA>
13 >0.9
14 <NA>
15 <NA>
16 <NA>
17 0.008
18 0.008
19 0.9
20 <NA>
21 0.5
22 <NA>
23 0.9
24 <NA>
25 <NA>
26 <NA>
27 <NA>
28 0.9
29 <NA>
30 <NA>
31 <NA>
32 0.9
33 <NA>
34 0.9
35 0.5
Code
tbl_stack(lst_summary, group_header = c("Group 1", "Group 2")) %>%
as.data.frame()
Message
i Column headers among stacked tables differ. Headers from the first table are
used. Use `quiet = TRUE` to suppress this message.
Output
**Group** **Characteristic** **0**, N = 132 **1**, N = 61
1 Group 1 Chemotherapy Treatment <NA> <NA>
2 <NA> Drug A 67 (51%) 28 (46%)
3 <NA> Drug B 65 (49%) 33 (54%)
4 <NA> Age 46 (36, 55) 49 (43, 59)
5 <NA> Unknown 7 3
6 <NA> Marker Level (ng/mL) 0.59 (0.21, 1.24) 0.98 (0.31, 1.53)
7 <NA> Unknown 6 4
8 <NA> T Stage <NA> <NA>
9 <NA> T1 34 (26%) 18 (30%)
10 <NA> T2 39 (30%) 13 (21%)
11 <NA> T3 25 (19%) 15 (25%)
12 <NA> T4 34 (26%) 15 (25%)
13 <NA> Grade <NA> <NA>
14 <NA> I 46 (35%) 21 (34%)
15 <NA> II 44 (33%) 19 (31%)
16 <NA> III 42 (32%) 21 (34%)
17 <NA> Patient Died 83 (63%) 24 (39%)
18 <NA> Months to Death/Censor 20.6 (15.0, 24.0) 24.0 (18.4, 24.0)
19 Group 2 Age 46 (37, 59) 48 (39, 56)
20 <NA> Unknown 7 4
21 <NA> Marker Level (ng/mL) 0.84 (0.24, 1.57) 0.52 (0.19, 1.20)
22 <NA> Unknown 6 4
23 <NA> T Stage <NA> <NA>
24 <NA> T1 28 (29%) 25 (25%)
25 <NA> T2 25 (26%) 29 (28%)
26 <NA> T3 22 (22%) 21 (21%)
27 <NA> T4 23 (23%) 27 (26%)
28 <NA> Grade <NA> <NA>
29 <NA> I 35 (36%) 33 (32%)
30 <NA> II 32 (33%) 36 (35%)
31 <NA> III 31 (32%) 33 (32%)
32 <NA> Tumor Response 28 (29%) 33 (34%)
33 <NA> Unknown 3 4
34 <NA> Patient Died 52 (53%) 60 (59%)
35 <NA> Months to Death/Censor 23.5 (17.4, 24.0) 21.2 (14.6, 24.0)
**p-value** **q-value**
1 0.5 0.7
2 <NA> <NA>
3 <NA> <NA>
4 0.091 0.2
5 <NA> <NA>
6 0.10 0.2
7 <NA> <NA>
8 0.6 0.7
9 <NA> <NA>
10 <NA> <NA>
11 <NA> <NA>
12 <NA> <NA>
13 >0.9 >0.9
14 <NA> <NA>
15 <NA> <NA>
16 <NA> <NA>
17 0.002 0.008
18 0.001 0.008
19 0.7 0.9
20 <NA> <NA>
21 0.085 0.5
22 <NA> <NA>
23 0.9 0.9
24 <NA> <NA>
25 <NA> <NA>
26 <NA> <NA>
27 <NA> <NA>
28 0.9 0.9
29 <NA> <NA>
30 <NA> <NA>
31 <NA> <NA>
32 0.5 0.9
33 <NA> <NA>
34 0.4 0.9
35 0.14 0.5
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Stacking tbl_regression objects
Code
tbl_stack(list(t1, t2), group_header = c("Group 1", "Group 2")) %>%
as.data.frame()
Output
**Group** **Characteristic** **OR** **95% CI** **p-value**
1 Group 1 Treatment (unadjusted) <NA> <NA> <NA>
2 <NA> Drug A <NA> <NA> <NA>
3 <NA> Drug B 1.21 0.66, 2.24 0.5
4 Group 2 Treatment (adjusted) <NA> <NA> <NA>
5 <NA> Drug A <NA> <NA> <NA>
6 <NA> Drug B 1.48 0.78, 2.86 0.2
Stacking tbl_merge objects
Code
tbl_stack(list(row1, row2)) %>% as.data.frame()
Message
i Column headers among stacked tables differ. Headers from the first table are
used. Use `quiet = TRUE` to suppress this message.
Output
**Characteristic** **OR** **95% CI** **p-value** **HR** **95% CI**
1 Treatment (unadjusted) <NA> <NA> <NA> <NA> <NA>
2 Drug A <NA> <NA> <NA> <NA> <NA>
3 Drug B 1.21 0.66, 2.24 0.5 1.25 0.86, 1.81
4 Treatment (adjusted) <NA> <NA> <NA> <NA> <NA>
5 Drug A <NA> <NA> <NA> <NA> <NA>
6 Drug B 1.48 0.78, 2.86 0.2 1.30 0.88, 1.92
**p-value**
1 <NA>
2 <NA>
3 0.2
4 <NA>
5 <NA>
6 0.2
Stacking tbl_summary objects
Code
zz %>% as.data.frame()
Output
**Characteristic** **0**, N = 132 **1**, N = 61 **p-value**
1 Chemotherapy Treatment <NA> <NA> 0.5
2 Drug A 67 (51%) 28 (46%) <NA>
3 Drug B 65 (49%) 33 (54%) <NA>
4 Age 46 (36, 55) 49 (43, 59) 0.091
5 Unknown 7 3 <NA>
6 Marker Level (ng/mL) 0.59 (0.21, 1.24) 0.98 (0.31, 1.53) 0.10
7 Unknown 6 4 <NA>
8 T Stage <NA> <NA> 0.6
9 T1 34 (26%) 18 (30%) <NA>
10 T2 39 (30%) 13 (21%) <NA>
11 T3 25 (19%) 15 (25%) <NA>
12 T4 34 (26%) 15 (25%) <NA>
13 Grade <NA> <NA> >0.9
14 I 46 (35%) 21 (34%) <NA>
15 II 44 (33%) 19 (31%) <NA>
16 III 42 (32%) 21 (34%) <NA>
17 Patient Died 83 (63%) 24 (39%) 0.002
18 Months to Death/Censor 20.6 (15.0, 24.0) 24.0 (18.4, 24.0) 0.001
19 Age 46 (37, 59) 48 (39, 56) 0.7
20 Unknown 7 4 <NA>
21 Marker Level (ng/mL) 0.84 (0.24, 1.57) 0.52 (0.19, 1.20) 0.085
22 Unknown 6 4 <NA>
23 T Stage <NA> <NA> 0.9
24 T1 28 (29%) 25 (25%) <NA>
25 T2 25 (26%) 29 (28%) <NA>
26 T3 22 (22%) 21 (21%) <NA>
27 T4 23 (23%) 27 (26%) <NA>
28 Grade <NA> <NA> 0.9
29 I 35 (36%) 33 (32%) <NA>
30 II 32 (33%) 36 (35%) <NA>
31 III 31 (32%) 33 (32%) <NA>
32 Tumor Response 28 (29%) 33 (34%) 0.5
33 Unknown 3 4 <NA>
34 Patient Died 52 (53%) 60 (59%) 0.4
35 Months to Death/Censor 23.5 (17.4, 24.0) 21.2 (14.6, 24.0) 0.14
**q-value**
1 0.7
2 <NA>
3 <NA>
4 0.2
5 <NA>
6 0.2
7 <NA>
8 0.7
9 <NA>
10 <NA>
11 <NA>
12 <NA>
13 >0.9
14 <NA>
15 <NA>
16 <NA>
17 0.008
18 0.008
19 0.9
20 <NA>
21 0.5
22 <NA>
23 0.9
24 <NA>
25 <NA>
26 <NA>
27 <NA>
28 0.9
29 <NA>
30 <NA>
31 <NA>
32 0.9
33 <NA>
34 0.9
35 0.5
Code
tbl_stack(lst_summary, group_header = c("Group 1", "Group 2")) %>%
as.data.frame()
Message
i Column headers among stacked tables differ. Headers from the first table are
used. Use `quiet = TRUE` to suppress this message.
Output
**Group** **Characteristic** **0**, N = 132 **1**, N = 61
1 Group 1 Chemotherapy Treatment <NA> <NA>
2 <NA> Drug A 67 (51%) 28 (46%)
3 <NA> Drug B 65 (49%) 33 (54%)
4 <NA> Age 46 (36, 55) 49 (43, 59)
5 <NA> Unknown 7 3
6 <NA> Marker Level (ng/mL) 0.59 (0.21, 1.24) 0.98 (0.31, 1.53)
7 <NA> Unknown 6 4
8 <NA> T Stage <NA> <NA>
9 <NA> T1 34 (26%) 18 (30%)
10 <NA> T2 39 (30%) 13 (21%)
11 <NA> T3 25 (19%) 15 (25%)
12 <NA> T4 34 (26%) 15 (25%)
13 <NA> Grade <NA> <NA>
14 <NA> I 46 (35%) 21 (34%)
15 <NA> II 44 (33%) 19 (31%)
16 <NA> III 42 (32%) 21 (34%)
17 <NA> Patient Died 83 (63%) 24 (39%)
18 <NA> Months to Death/Censor 20.6 (15.0, 24.0) 24.0 (18.4, 24.0)
19 Group 2 Age 46 (37, 59) 48 (39, 56)
20 <NA> Unknown 7 4
21 <NA> Marker Level (ng/mL) 0.84 (0.24, 1.57) 0.52 (0.19, 1.20)
22 <NA> Unknown 6 4
23 <NA> T Stage <NA> <NA>
24 <NA> T1 28 (29%) 25 (25%)
25 <NA> T2 25 (26%) 29 (28%)
26 <NA> T3 22 (22%) 21 (21%)
27 <NA> T4 23 (23%) 27 (26%)
28 <NA> Grade <NA> <NA>
29 <NA> I 35 (36%) 33 (32%)
30 <NA> II 32 (33%) 36 (35%)
31 <NA> III 31 (32%) 33 (32%)
32 <NA> Tumor Response 28 (29%) 33 (34%)
33 <NA> Unknown 3 4
34 <NA> Patient Died 52 (53%) 60 (59%)
35 <NA> Months to Death/Censor 23.5 (17.4, 24.0) 21.2 (14.6, 24.0)
**p-value** **q-value**
1 0.5 0.7
2 <NA> <NA>
3 <NA> <NA>
4 0.091 0.2
5 <NA> <NA>
6 0.10 0.2
7 <NA> <NA>
8 0.6 0.7
9 <NA> <NA>
10 <NA> <NA>
11 <NA> <NA>
12 <NA> <NA>
13 >0.9 >0.9
14 <NA> <NA>
15 <NA> <NA>
16 <NA> <NA>
17 0.002 0.008
18 0.001 0.008
19 0.7 0.9
20 <NA> <NA>
21 0.085 0.5
22 <NA> <NA>
23 0.9 0.9
24 <NA> <NA>
25 <NA> <NA>
26 <NA> <NA>
27 <NA> <NA>
28 0.9 0.9
29 <NA> <NA>
30 <NA> <NA>
31 <NA> <NA>
32 0.5 0.9
33 <NA> <NA>
34 0.4 0.9
35 0.14 0.5
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