x.sexcheck: consistency checks for x.linked locus
In haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
x.sexcheck R Documentation
consistency checks for x.linked locus
Description
Given an x.linked locus object and a vector of gender codes, the
function will check to make sure the gender codes match the codes used
to originally define the locus, and that no individuals defined as
males are heterozygous.
Usage
x.sexcheck(x, sex, stop=FALSE)
Arguments
x
an object of class locus
sex
a vector of codes identifying the gender of each individual contained
in the locus object
stop
if T , any warnings are converted to errors and execution is
halted immediately
Value
T if one or more errors were found
F if no errors were found
See Also
locus
Examples
c1 <- c(101,10, 112,112,21,112)
c2 <- c(101,101,112,100,21, 10)
gender <- rep(c("M","F"),3)
loc2 <- locus(c1,c2,chrom="X",locus.alias="DXS1234", x.linked=TRUE, sex=gender)
loc2
haplo.stats documentation built on May 29, 2024, 9:53 a.m.
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| x.sexcheck | R Documentation |
consistency checks for x.linked locus
Description
Given an x.linked locus object and a vector of gender codes, the function will check to make sure the gender codes match the codes used to originally define the locus, and that no individuals defined as males are heterozygous.
Usage
x.sexcheck(x, sex, stop=FALSE)
Arguments
x |
an object of class locus |
sex |
a vector of codes identifying the gender of each individual contained in the locus object |
stop |
if T , any warnings are converted to errors and execution is halted immediately |
Value
T if one or more errors were found F if no errors were found
See Also
locus
Examples
c1 <- c(101,10, 112,112,21,112)
c2 <- c(101,101,112,100,21, 10)
gender <- rep(c("M","F"),3)
loc2 <- locus(c1,c2,chrom="X",locus.alias="DXS1234", x.linked=TRUE, sex=gender)
loc2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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