Nothing
context("Print-method")
escape_regexp <- function(string) {
gsub("([.|()\\^{}+$*?]|\\[|\\])", "\\\\\\1", string)
}
test_that("Print functions work as expected", {
## create a file and call print
test_file <- tempfile(fileext=".h5")
## H5S default class
expect_output(h5const$H5S_ALL$print(), "H5S_ALL class")
expect_output(h5const$H5P_DEFAULT$print(), "H5P_DEFAULT class")
## open a new one, truncate if it exists
file.h5 <- H5File$new(test_file, mode="w")
h5group <- file.h5$create_group("test")
## add some attributes
h5attr(file.h5, "attr1") <- 1.0
h5attr(file.h5, "attr2") <- "A"
h5attr(h5group, "grp_attr") <- "a group"
## create a space that defines the nsize fo the new dataset
dset_space <- H5S$new(type="simple", dims=c(5,10,15))
h5dset <- h5group$create_dataset("test_dset", dtype=h5types$H5T_IEEE_F64LE, space=dset_space)
## check that the pring output for spaces is ok
expect_output(dset_space$print(), regexp="Class: H5S\nType: Simple\nDims: 5 x 10 x 15\nMaxdims: 5 x 10 x 15", fixed=TRUE)
## also test output for a scalar and a null space
expect_output(H5S$new(type="scalar")$print(),
regexp="Class: H5S\nType: Scalar", fixed=TRUE)
expect_output(H5S$new(type="null")$print(),
regexp="Class: H5S\nType: NULL", fixed=TRUE)
## H5File has its location as part of its output
expect_output(file.h5$print(), regexp=paste0("Class: H5File\nFilename: ",
normalizePath(test_file, mustWork=FALSE),
"\nAccess type: H5F_ACC_RDWR\n",
"Attributes: attr1, attr2\n",
"Listing:\n",
" name obj_type dataset.dims dataset.type_class\n",
" test H5I_GROUP <NA> <NA>"), fixed=TRUE)
#H5Group also prints the name of the group
expect_output(h5group$print(), regexp=paste0("Class: H5Group\nFilename: ",
normalizePath(test_file, mustWork=FALSE),
"\nGroup: /test\nAttributes: grp_attr\n",
"Listing:\n",
" name obj_type dataset.dims dataset.type_class\n",
" test_dset H5I_DATASET 5 x 10 x 15 H5T_FLOAT"), fixed=TRUE)
## create a dataset inside the group
expect_output(h5dset$print(), regexp=paste0("Class: H5D\n",
"Dataset: /test/test_dset\n",
"Filename: ",
normalizePath(test_file, mustWork=FALSE),
"\nAccess type: H5F_ACC_RDWR\n",
"Datatype: H5T_IEEE_F64LE\n",
"Space: Type=Simple Dims=5 x 10 x 15 Maxdims=5 x 10 x 15\n",
"Chunk: 5 x 10 x 15"), fixed=TRUE)
## test the printing of datatypes
test_type <- h5types$H5T_STD_I32LE
expect_output(test_type$print(), regexp=paste0("Class: H5T_INTEGER\nDatatype: H5T_STD_I32LE"), fixed=TRUE)
group_attr <- h5group$attr_open_by_name("grp_attr", ".")
expect_output(group_attr$print(), regexp=paste0("Class: H5A\n",
"Attribute: grp_attr\n",
"Datatype: H5T_STRING {\n",
" STRSIZE H5T_VARIABLE;\n",
" STRPAD H5T_STR_NULLTERM;\n",
" CSET H5T_CSET_ASCII;\n",
" CTYPE H5T_C_S1;\n",
" }\n",
"Space: Type=Simple Dims=1 Maxdims=1"), fixed=TRUE)
## cleanup
file.h5$close_all()
file.remove(test_file)
})
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.