heemod: Models for Health Economic Evaluation
Version 0.9.1

Health Economic Evaluation Modelling: decision trees and cohort simulations. Provides a simple and consistent interface for Markov models specification, comparison, sensitivity and probabilistic analysis, input of survival models, etc. Models with time varying properties (non-homogeneous Markov models and semi-Markov models) are supported.

Browse man pages Browse package API and functions Browse package files

AuthorAntoine Filipovic-Pierucci [aut, cre], Kevin Zarca [aut], Matthew Wiener [ctb], Zdenek Kabat [ctb], Vojtech Filipec [ctb], Jordan Amdahl [ctb]
Date of publication2017-05-09 14:44:12 UTC
MaintainerAntoine Filipovic-Pierucci <pierucci@gmail.com>
LicenseGPL (>= 3)
Version0.9.1
URL https://github.com/pierucci/heemod https://pierucci.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("heemod")

Man pages

acceptability_curve: Acceptability Curve from Probabilistic Analysis
add_hazards: Add Hazards
apply_af: Apply an Acceleration Factor
apply_hr: Apply a Hazard Ratio
apply_or: Apply an Odds Ratio
as_expr_list: Convert Lazy Dots to Expression List
calc_prob_from_surv: Calculate Probability of Event
calc_surv_from_prob: Calculate Probability of Survival
calibrate_model: Calibrate Model Parameters
check_cycle_inputs: Check Cycle and Time Inputs
check_matrix: Check Markov Model Transition Matrix
check_names: Check Names
check_states: Check Model States for Consistency
check_strategy_index: Check Strategy Index
clean_factors: Convert Data Frame Factor Variables to Character
cluster: Run 'heemod' on a Cluster
combine_models: Combine Multiple Models
combine_probs: Combine Probabilities
compute_counts: Compute Count of Individual in Each State per Cycle
compute_icer: Compute ICER
compute_surv: Evaluate Survival Distributions
compute_values: Compute State Values per Cycle
construct_part_surv_tib: construct a survival object from tabular specification
create_demographic_table: Read a Demographic Table
create_df_from_tabular: Load Data From a Folder Into an Environment
create_matrix_from_tabular: Create a Transition Matrix From Tabular Input
create_model_from_tabular: Create a 'heemod' Model From Tabular Files Info
create_model_list_from_tabular: Read Models Specified by Files
create_options_from_tabular: Create Model Options From a Tabular Input
create_parameters_from_tabular: Create a Parameter Definition From Tabular Input
create_states_from_tabular: Create State Definitions From Tabular Input
define_calibration_fn: Define Calibration Function
define_correlation: Define a Correlation Structure for Probabilistic Uncertainty...
define_dsa: Define a Sensitivity Analysis
define_inflow: Define Inflow for a BIA
define_init: Define Initial Counts
define_multinom: Define That Parameters Belong to the Same Multinomial...
define_parameters: Define Markov Model Parameters
define_part_surv: Define Partitioned Survival
define_psa: Define Parameters Distribution for Probabilistic Analysis
define_spline_survival: Define a Restricted Cubic Spline Survival Distribution
define_state: Define a Markov Model State
define_state_list: Define Markov Model State List
define_strategy: Define a Markov Model
define_survival: Define a Survival Distribution
define_transition: Define Transition Matrix for Markov Model
discount: Discount a Quantity Over Time
discount_hack: Hack to Work Around a Discounting Issue
dispatch_strategy: Dispatch Values According to Strategy
dispatch_strategy_hack: Hack to Automate Use of Strategy Name
distributions: Probability Density Functions for Probabilistic Uncertainty...
eval_models_from_tabular: Evaluate Models From a Tabular Source
eval_parameters: Evaluate Markov model parameters
eval_resample: Evaluate Resampling Definition
eval_state_list: Evaluate Markov Model States
eval_strategy: Evaluate Strategy
eval_strategy_newdata: Iteratively Evaluate a Markov Model With New Parameter Values
eval_surv: Evaluate Survival Distributions
eval_transition: Evaluate Markov Model Transition Matrix
expand_state: Expand Time-Dependant States into Tunnel States
export_savi: Export PSA Results for SAVI
extract_params: Extract Evaluated Parameters
extract_strata: Extract Product-Limit Tables
extract_stratum: Extract Product-Limit Table for a Stratum
file_checkers: Check File Type
filter_blanks: Remove Blank Rows From Table
gather_model_info: Gather Information for Running a Model From Tabular Data
get_counts: Get State Membership Counts
get_frontier: Return Efficiency Frontier
get_matrix_order: Return Markov Model Transition Matrix Order
get_parameter_names: Return parameters names
get_state_names: Get State Names
get_state_number: Return Number of State
get_state_value_names: Return Names of State Values
get_transition: Get Markov Model Transition Matrix
get_values: Get Strategy Values
heemod: heemod: Health Economic Evaluation MODelling
heemod_scale: Normalize Cost and Effect
insert: Insert Elements in Vector
interp_heemod: Interpolate Lazy Dots
is.wholenumber: Check Wholenumbers
join: Project Beyond a Survival Distribution with Another
list_all_same: Check if All the Elements of a List Are the Same
look_up: Look Up Values in a Data Frame
make_names: Make Syntactically Valid Names
modify: Modify Object
parse_multi_spec: Specify Inputs for Multiple Models From a Single File
part_survs_from_surv_inputs: Convert saved fits to partitioned survival objects
plot.dsa: Plot Sensitivity Analysis
plot.psa: Plot Results of Probabilistic Analysis
plot.run_model: Plot Results of a Markov Model
plot.surv_obj: Plot general survival models
plur: Returns "s" if x > 1
pool: Pool Two or More Survival Distributions
probability: Convenience Functions to Compute Probabilities
project_fn: Project Beyond a Survival Distribution with Another...
read_file: Read the accepted file formats for tabular input
reexports: Objects exported from other packages
rescale_discount_rate: Rescale Discount Rate
run_dsa: Run Sensitivity Analysis
run_model: Run Markov Model
run_model_tabular: Run Analyses From Files
run_psa: Run Probabilistic Uncertainty Analysis
safe_conversion: Safely Convert From Characters to Numbers
save_outputs: Save Model Outputs
set_covariates: Set Covariates of a Survival Distribution
summary.run_model: Summarise Markov Model Results
update_model: Run Model on New Data
who_mortality: Use WHO Mortality Rate
wtd_summary: Weighted Summary

Functions

\%>\% Man page
acceptability_curve Man page Source code
add_hazards Man page Source code
add_hazards_ Man page Source code
all.funs Source code
apply_af Man page Source code
apply_hr Man page Source code
apply_or Man page Source code
as_expr_list Man page Source code
as_integer_safe Man page Source code
as_numeric_safe Man page Source code
beta Man page Man page Source code Source code
binomial Man page Source code
calc_prob_from_surv Man page Source code
calc_surv_from_prob Man page Source code
calibrate_model Man page Source code
check_cycle_inputs Man page Source code
check_inflow Source code
check_init Source code
check_init.default Source code
check_init.lazy_dots Source code
check_matrix Man page Source code
check_names Man page Source code
check_states Man page Source code
check_strategy_index Man page Source code
clean_factors Man page Source code Source code
close_cluster Man page Source code
cluster Man page
combine_models Man page Source code
combine_probs Man page Source code
combine_probs_ Source code
complete_stl Source code
compute_counts Man page Source code
compute_counts.eval_matrix Source code
compute_counts.eval_part_surv Source code
compute_cov Source code
compute_evpi Source code
compute_icer Man page Source code
compute_prop_var Source code
compute_surv Man page
compute_values Man page Source code
construct_part_surv_tib Man page Source code
correct_counts Source code
create_demographic_table Man page Source code
create_df_from_tabular Man page Source code
create_matrix_from_tabular Man page Source code
create_model_from_tabular Man page Source code
create_model_list_from_tabular Man page Source code
create_options_from_tabular Man page Source code
create_parameters_from_tabular Man page Source code
create_states_from_tabular Man page Source code
define_calibration_fn Man page Source code
define_correlation Man page Source code
define_correlation_ Man page Source code
define_distribution Man page Source code
define_dsa Man page Source code
define_dsa_ Man page Source code
define_inflow Man page Source code
define_inflow_ Man page Source code
define_init Man page Source code
define_init_ Man page Source code
define_multinom Man page Source code
define_parameters Man page Source code
define_parameters_ Man page Source code
define_part_surv Man page Source code
define_part_surv_ Man page Source code
define_psa Man page Source code
define_psa_ Man page Source code
define_spline_survival Man page Source code
define_state Man page Source code
define_state_ Man page Source code
define_state_list Man page Source code
define_state_list_ Man page Source code
define_strategy Man page Source code
define_strategy_ Man page Source code
define_survival Man page Source code
define_transition Man page Source code
define_transition_ Man page Source code
digits_at_diff Source code Source code
discount Man page Source code
discount_check Source code
discount_hack Man page Source code
dispatch_strategy Man page Source code
dispatch_strategy_check Source code
dispatch_strategy_hack Man page Source code
distributions Man page
eval_correlation Source code
eval_init Source code
eval_models_from_tabular Man page Source code
eval_newdata Source code
eval_parameters Man page Source code
eval_resample Man page Source code
eval_state_list Man page Source code
eval_strategy Man page Source code
eval_strategy_newdata Man page Source code
eval_surv Man page Source code
eval_surv.character Source code
eval_surv.flexsurvreg Man page Source code
eval_surv.lazy Source code
eval_surv.surv_add_haz Man page Source code
eval_surv.surv_aft Man page Source code
eval_surv.surv_dist Man page Source code
eval_surv.surv_model Man page Source code
eval_surv.surv_ph Man page Source code
eval_surv.surv_po Man page Source code
eval_surv.surv_pooled Man page Source code
eval_surv.surv_projection Man page Source code
eval_surv.survfit Man page Source code
eval_transition Man page Source code
eval_transition.part_surv Source code
eval_transition.uneval_matrix Source code
expand_state Man page Source code
expand_state.uneval_inflow Man page Source code
expand_state.uneval_init Man page Source code
expand_state.uneval_matrix Man page Source code
expand_state.uneval_state_list Man page Source code
export_savi Man page Source code
extract_params Man page Source code
extract_strata Man page Source code
extract_stratum Man page Source code
filter_blanks Man page Source code
fn_calibrate Source code
fn_calibrate.run_model Source code
fn_calibrate.updated_model Source code
fn_calibrate_wrapper Source code
gamma Man page Source code
gather_model_info Man page Source code
generate_wtp Source code
get_ce Source code
get_ce.combined_model Source code
get_ce_cost Source code
get_ce_effect Source code
get_central_strategy Source code
get_central_strategy.combined_model Source code
get_central_strategy.default Source code
get_central_strategy.dsa Source code
get_central_strategy.psa Source code
get_central_strategy.run_model Source code
get_cluster Source code
get_cost Source code
get_counts Man page Source code
get_counts.combined_model Man page Source code
get_counts.eval_strategy Man page Source code
get_counts.list Man page Source code
get_counts.run_model Man page Source code
get_counts.updated_model Man page Source code
get_cycles Source code
get_cycles.combined_model Source code
get_cycles.psa Source code
get_cycles.run_model Source code
get_effect Source code Source code
get_eval_inflow Source code
get_eval_inflow.eval_strategy Source code
get_eval_init Source code
get_eval_init.combined_model Source code
get_eval_init.eval_strategy Source code
get_eval_strategy_list Source code
get_expand_limit Source code
get_frontier Man page Source code
get_frontier.combined_model Source code
get_frontier.default Source code
get_frontier.psa Source code
get_frontier.run_model Source code
get_gho_mr Source code
get_inflow Source code
get_init.summary_run_model Source code
get_matrix_order Man page Source code
get_matrix_order.eval_matrix Source code
get_matrix_order.uneval_matrix Source code
get_method Source code
get_method.combined_model Source code
get_method.psa Source code
get_method.run_model Source code
get_model Source code
get_model.dsa Source code
get_model.psa Source code
get_model.summary_updated_model Source code
get_model.updated_model Source code
get_model_results Source code
get_model_results.combined_model Source code
get_model_results.psa Source code
get_model_results.run_model Source code
get_n_indiv Source code
get_n_indiv.combined_model Source code
get_n_indiv.default Source code
get_n_indiv.eval_strategy Source code
get_newdata Source code
get_noncomparable_strategy Source code
get_noncomparable_strategy.combined_model Source code
get_noncomparable_strategy.default Source code
get_noncomparable_strategy.psa Source code
get_noncomparable_strategy.run_model Source code
get_oldmodel Source code
get_package_mr Source code
get_parameter_names Man page Source code
get_parameter_names.eval_parameters Source code
get_parameter_names.run_model Source code
get_parameter_names.uneval_parameters Source code
get_parameter_names.updated_model Source code
get_parameter_values Source code
get_parameter_values.run_model Source code
get_parameter_values.updated_model Source code
get_parameters Source code
get_parameters.combined_model Source code
get_root_strategy Source code
get_root_strategy.combined_model Source code
get_root_strategy.default Source code
get_root_strategy.psa Source code
get_root_strategy.run_model Source code
get_state_names Man page Source code
get_state_names.array Source code
get_state_names.default Source code
get_state_names.eval_matrix Source code
get_state_names.part_surv Source code
get_state_names.run_model Source code
get_state_names.uneval_matrix Source code
get_state_names.uneval_model Source code
get_state_number Man page Source code
get_state_time_limit Source code
get_state_value_names Man page Source code
get_state_value_names.combined_model Source code
get_state_value_names.eval_state_list Source code
get_state_value_names.run_model Source code
get_state_value_names.state Source code
get_state_value_names.uneval_model Source code
get_state_value_names.uneval_state_list Source code
get_states Source code
get_states.default Source code
get_strategy_count Source code
get_strategy_names Source code
get_tm_pos Source code
get_total_state_values Source code
get_transition Man page Source code
get_transition.default Source code
get_uneval_inflow Source code
get_uneval_inflow.default Source code
get_uneval_init Source code
get_uneval_init.combined_model Source code
get_uneval_init.default Source code
get_uneval_init.psa Source code
get_uneval_strategy_list Source code
get_values Man page Source code
get_values.combined_model Man page Source code
get_values.eval_strategy Man page Source code
get_values.list Man page Source code
get_values.run_model Man page Source code
get_values.updated_model Man page Source code
get_who_mr Man page
get_who_mr_memo Man page Source code
guess_part_surv_state_names Source code
has_state_time Source code
has_state_time.part_surv Source code
has_state_time.state Source code
has_state_time.uneval_matrix Source code
has_state_time.uneval_state_list Source code
heemod Man page
heemod-package Man page
heemod_scale Man page
insert Man page Source code
interleave Source code
interp_heemod Man page Source code
interp_heemod.default Man page Source code
interp_heemod.part_surv Man page Source code
interp_heemod.state Man page Source code
interp_heemod.uneval_matrix Man page Source code
interp_heemod.uneval_state_list Man page Source code
is.wholenumber Man page Source code
is_csv Man page Source code
is_xls Man page Source code
is_xlsx Man page Source code
join Man page Source code
join_ Man page Source code
join_fits_across_time Source code
list_all_same Man page Source code
logitnormal Man page Source code
lognormal Man page Source code
look_up Man page Source code
make_gamma Source code
make_names Man page Source code
make_part_surv_from_small_tibble Source code
modify Man page Source code
modify.state Man page Source code
modify.uneval_matrix Man page Source code
modify.uneval_parameters Man page Source code
modify.uneval_state_list Man page Source code
modify_ Source code
modify_.state Source code
modify_.uneval_matrix Source code
modify_.uneval_parameters Source code
modify_.uneval_state_list Source code
modify_param_defs_for_multinomials Source code
multinom Source code
multinomial Man page Source code
normal Man page Source code
onLoad Source code
or_to_prob Man page Source code
parse_multi_spec Man page Source code
part_survs_from_surv_inputs Man page Source code
plot.combined_model Source code
plot.dsa Man page Source code
plot.psa Man page Source code
plot.run_model Man page Source code
plot.surv_obj Man page Source code
plot.uneval_matrix Man page Source code
plot.updated_model Man page Source code
plur Man page Source code
plur_y Man page Source code
poisson Man page Source code
pool Man page Source code
pool_ Man page Source code
pool_data Source code
pretty_names Source code
print.combined_model Source code
print.correlation_matrix Source code
print.dsa Source code
print.eval_matrix Source code
print.eval_state_list Source code
print.psa Source code
print.resamp_definition Source code
print.run_model Source code
print.sensitivity Source code
print.state Source code
print.summary_dsa Source code
print.summary_run_model Source code
print.summary_updated_model Source code
print.uneval_matrix Source code
print.uneval_model Source code
print.uneval_parameters Source code
print.uneval_state_list Source code
print.updated_model Source code
print_results Source code
prob_to_prob Man page Source code
probability Man page
project Man page Source code
project_ Man page Source code
project_fn Man page Source code
prop Source code
r_beta Source code Source code
r_binomial Source code
r_gamma Source code
r_logitnormal Source code
r_lognormal Source code
r_multinomial Source code
r_normal Source code
r_poisson Source code
r_triangle Source code Source code
rate_to_prob Man page Source code
read_file Man page Source code
reexports Man page
replace_C Source code
rescale_discount_rate Man page Source code
rescale_prob Man page Source code
rr_to_prob Man page Source code
run_dsa Man page Source code
run_model Man page Source code
run_model_ Man page Source code
run_model_tabular Man page Source code
run_psa Man page Source code
safe_conversion Man page
safe_convert Man page Source code
save_graph Source code
save_outputs Man page Source code
scale.combined_model Man page Source code
scale.dsa Man page Source code
scale.psa Man page Source code
scale.run_model Man page Source code
scale.updated_model Source code
set_cluster Source code
set_covariates Man page Source code
set_covariates_ Man page Source code
set_states Source code
set_states.default Source code
set_transition Source code
set_transition.default Source code
split_along_dim Source code
status_cluster Man page Source code
stop_frontier Source code
substitute_dots Source code
summary.combined_model Source code
summary.dsa Source code
summary.psa Source code
summary.run_model Man page Source code
summary.updated_model Source code
theme_pub_bw Source code
tidy_dsa Source code
to_char_uneval_matrix Source code
to_dots Source code
to_dots.default Source code
to_dots.list Source code
to_text_dots Source code
trans_age_gho Source code
trans_sex_gho Source code
transition_type Source code
triangle Man page Man page Source code Source code
update.run_model Man page Source code
update_model Man page
use_cluster Man page Source code
vswitch Source code
vswitch.character Source code
vswitch.default Source code
vswitch.factor Source code
who_mortality Man page
wtd_summary Man page Source code

Files

COPYING
inst
inst/examples
inst/examples/example_eval_strategy_newdata.R
inst/examples/example_define_state.R
inst/examples/example_define_strategy.R
inst/examples/example_transform.R
inst/examples/example_define_calibration_fn.R
inst/examples/example_define_resample.R
inst/examples/example_define_transition.R
inst/examples/example_plot.run_model.R
inst/examples/example_look_up.R
inst/examples/example_update.R
inst/examples/example_calibration.R
inst/examples/example_run_model.R
inst/examples/example_define_parameters.R
inst/examples/example_run_psa.R
inst/examples/example_eval_strategy.R
inst/examples/example_run_dsa.R
inst/examples/example_eval_parameters.R
inst/CITATION
inst/media
inst/media/logo.png
inst/doc
inst/doc/f_sensitivity.R
inst/doc/a_introduction.R
inst/doc/e_probabilistic.html
inst/doc/j_survival.html
inst/doc/k_calibration.html
inst/doc/d_non_homogeneous.Rmd
inst/doc/f_sensitivity.Rmd
inst/doc/d_non_homogeneous.html
inst/doc/c_homogeneous.R
inst/doc/c_homogeneous.Rmd
inst/doc/h_tabular.html
inst/doc/e_probabilistic.R
inst/doc/i_reproduction.R
inst/doc/a_introduction.Rmd
inst/doc/c_homogeneous.html
inst/doc/j_survival.Rmd
inst/doc/i_reproduction.html
inst/doc/a_introduction.html
inst/doc/b_time_dependency.Rmd
inst/doc/k_calibration.R
inst/doc/h_tabular.Rmd
inst/doc/h_tabular.R
inst/doc/j_survival.R
inst/doc/b_time_dependency.R
inst/doc/d_non_homogeneous.R
inst/doc/g_heterogeneity.Rmd
inst/doc/i_reproduction.Rmd
inst/doc/g_heterogeneity.R
inst/doc/e_probabilistic.Rmd
inst/doc/f_sensitivity.html
inst/doc/k_calibration.Rmd
inst/doc/g_heterogeneity.html
inst/doc/b_time_dependency.html
inst/tabular
inst/tabular/thr
inst/tabular/thr/THR_transition_probs.csv
inst/tabular/thr/THR_demographic_table.csv
inst/tabular/thr/THR_options.csv
inst/tabular/thr/output
inst/tabular/thr/output/psa_values.csv
inst/tabular/thr/output/cycle_values.csv
inst/tabular/thr/output/psa.png
inst/tabular/thr/output/state_counts.csv
inst/tabular/thr/output/icer_by_group.csv
inst/tabular/thr/output/dsa.png
inst/tabular/thr/output/acceptability.pdf
inst/tabular/thr/output/dsa.pdf
inst/tabular/thr/output/dsa_diff.png
inst/tabular/thr/output/dsa_diff.pdf
inst/tabular/thr/output/state_count_plot.pdf
inst/tabular/thr/output/acceptability.png
inst/tabular/thr/output/psa.pdf
inst/tabular/thr/output/dsa.csv
inst/tabular/thr/output/state_count_plot.png
inst/tabular/thr/THR_options_2core.csv
inst/tabular/thr/REFERENCE.csv
inst/tabular/thr/input_dataframes
inst/tabular/thr/input_dataframes/mr_table.xlsx
inst/tabular/thr/THR_states.csv
inst/tabular/thr/THR_parameters.csv
inst/tabular/thr/REFERENCE_2core.csv
inst/tabular/surv
inst/tabular/surv/example_oncParams_nomatrix.csv
inst/tabular/surv/example_oncSpecs_nomatrix_mixed.csv
inst/tabular/surv/example_oncStates.csv
inst/tabular/surv/fake_fit_tib.csv
inst/tabular/surv/use_fits_example0.csv
inst/tabular/surv/survival_info_nomatrix_run.csv
inst/tabular/surv/example_oncSpecs_nomatrix_run.csv
inst/tabular/surv/example_oncOptions.csv
inst/tabular/surv/surv_def_ok.csv
inst/tabular/surv/example_oncParams.csv
inst/tabular/surv/use_fits_with_join.csv
inst/tabular/surv/use_fits.csv
inst/tabular/surv/survival_info.csv
inst/tabular/surv/example_oncSpecs_explicit_dists.csv
inst/tabular/surv/example_oncSpecs.csv
inst/tabular/surv/use_fits_mixed.csv
inst/tabular/surv/example_oncTransitionProbs.csv
inst/tabular/surv/example_oncParams_explicit_dists.csv
inst/tabular/surv/survival_info_explicit_dists.csv
inst/tabular/surv/example_oncSpecs_nomatrix.csv
inst/tabular/test
inst/tabular/test/THR_test_transition_probs_1missing.csv
inst/tabular/test/THR_test_transition_probs_2.csv
inst/tabular/test/test_diff_mod_name
inst/tabular/test/test_diff_mod_name/THR_transition_probs.csv
inst/tabular/test/test_diff_mod_name/REFERENCE.csv
inst/tabular/test/test_diff_mod_name/THR_states.csv
inst/tabular/test/example_multinom_params.csv
inst/tabular/test/test_no_overwrite
inst/tabular/test/test_no_overwrite/THR_transition_probs.csv
inst/tabular/test/test_no_overwrite/THR_demographic_table.csv
inst/tabular/test/test_no_overwrite/THR_options.csv
inst/tabular/test/test_no_overwrite/output
inst/tabular/test/test_no_overwrite/output/state_count_plot_standard.png
inst/tabular/test/test_no_overwrite/REFERENCE.csv
inst/tabular/test/test_no_overwrite/input_dataframes
inst/tabular/test/test_no_overwrite/input_dataframes/mr_table.xlsx
inst/tabular/test/test_no_overwrite/THR_states.csv
inst/tabular/test/test_no_overwrite/THR_parameters.csv
inst/tabular/test/example_multinom_params_dup_name.csv
inst/tabular/test/testing_CSV_file_with_comment_col.csv
inst/tabular/test/wrong_ext.tab
inst/tabular/test/THR_options.csv
inst/tabular/test/survival_spec_1.csv
inst/tabular/test/THR_test_states.csv
inst/tabular/test/edited_ref.csv
inst/tabular/test/THR_test_transition_probs.csv
inst/tabular/test/testing_XLS_file_with_comment_col.xls
inst/tabular/test/REFERENCE_1probmissing.csv
inst/tabular/test/REFERENCE_missingfunctions.csv
inst/tabular/test/survival_spec_error_2.csv
inst/tabular/test/survival_spec_error_1.csv
inst/tabular/test/testing_XLSX_file_with_comment_col.xlsx
inst/tabular/test/THR_test_transition_probs_bad.csv
inst/tabular/test/survival_spec_2.csv
inst/tabular/test/test_no_output_dir
inst/tabular/test/test_no_output_dir/THR_transition_probs.csv
inst/tabular/test/test_no_output_dir/THR_demographic_table.csv
inst/tabular/test/test_no_output_dir/THR_options.csv
inst/tabular/test/test_no_output_dir/REFERENCE.csv
inst/tabular/test/test_no_output_dir/input_dataframes
inst/tabular/test/test_no_output_dir/input_dataframes/mr_table.xlsx
inst/tabular/test/test_no_output_dir/THR_states.csv
inst/tabular/test/test_no_output_dir/THR_parameters.csv
inst/tabular/test/THR_parameters.csv
inst/tabular/test/bad_REFERENCE.csv
inst/tabular/test/toedit_REFERENCE.csv
tests
tests/testthat.R
tests/testthat
tests/testthat/test_parallel.R
tests/testthat/Rplots.pdf
tests/testthat/test_states.R
tests/testthat/test_look_up.R
tests/testthat/test_parameters.R
tests/testthat/test_run_model.R
tests/testthat/test_sensitivity.R
tests/testthat/test_transform.R
tests/testthat/test_expand.R
tests/testthat/test_efficiency_frontier.R
tests/testthat/test_tabular_input.R
tests/testthat/test_model.R
tests/testthat/test_surv_eval.R
tests/testthat/test_probabilistic.R
tests/testthat/test_matrix.R
tests/testthat/test_heterogeneity.R
tests/testthat/test_dmhee.R
tests/testthat/test_part_surv.R
NAMESPACE
NEWS.md
R
R/strategy_define.R
R/utils.R
R/combine.R
R/covariance.R
R/resamp_print.R
R/look_up.R
R/efficiency_frontier.R
R/theme_ggplot.R
R/sysdata.rda
R/resamp_define.R
R/param_print.R
R/run_model_summary.R
R/run_model_define.R
R/survival_define.R
R/acceptability_curve.R
R/survival_operations.R
R/update.R
R/heemod.R
R/gho_mortality.R
R/matrix_plot.R
R/sensitivity_define.R
R/param_eval.R
R/newdata.R
R/resamp_eval.R
R/part_surv.R
R/density.R
R/sensitivity_eval.R
R/evpi.R
R/cluster.R
R/tabular_input.R
R/states_define.R
R/calibration.R
R/correct_counts.R
R/param_define.R
R/states_print.R
R/expand.R
R/transform.R
R/strategy_eval.R
R/survival_eval.R
R/matrix_eval.R
R/strategy_print.R
R/matrix_define.R
R/dispatch_strategy.R
R/states_eval.R
R/zzz.R
R/sensitivity_print.R
vignettes
vignettes/d_non_homogeneous.Rmd
vignettes/f_sensitivity.Rmd
vignettes/c_homogeneous.Rmd
vignettes/a_introduction.Rmd
vignettes/j_survival.Rmd
vignettes/b_time_dependency.Rmd
vignettes/h_tabular.Rmd
vignettes/g_heterogeneity.Rmd
vignettes/i_reproduction.Rmd
vignettes/e_probabilistic.Rmd
vignettes/k_calibration.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/combine_models.Rd
man/calibrate_model.Rd
man/create_states_from_tabular.Rd
man/eval_models_from_tabular.Rd
man/run_model_tabular.Rd
man/construct_part_surv_tib.Rd
man/get_counts.Rd
man/who_mortality.Rd
man/pool.Rd
man/modify.Rd
man/get_values.Rd
man/eval_state_list.Rd
man/acceptability_curve.Rd
man/eval_transition.Rd
man/discount.Rd
man/plot.dsa.Rd
man/get_state_names.Rd
man/apply_or.Rd
man/wtd_summary.Rd
man/export_savi.Rd
man/as_expr_list.Rd
man/gather_model_info.Rd
man/check_states.Rd
man/get_frontier.Rd
man/save_outputs.Rd
man/create_options_from_tabular.Rd
man/compute_icer.Rd
man/filter_blanks.Rd
man/interp_heemod.Rd
man/check_names.Rd
man/apply_hr.Rd
man/run_model.Rd
man/is.wholenumber.Rd
man/define_transition.Rd
man/define_psa.Rd
man/define_multinom.Rd
man/cluster.Rd
man/define_spline_survival.Rd
man/safe_conversion.Rd
man/eval_parameters.Rd
man/compute_values.Rd
man/expand_state.Rd
man/check_cycle_inputs.Rd
man/create_model_list_from_tabular.Rd
man/check_matrix.Rd
man/heemod.Rd
man/heemod_scale.Rd
man/define_part_surv.Rd
man/read_file.Rd
man/file_checkers.Rd
man/define_survival.Rd
man/run_psa.Rd
man/project_fn.Rd
man/define_state_list.Rd
man/create_df_from_tabular.Rd
man/define_correlation.Rd
man/eval_resample.Rd
man/combine_probs.Rd
man/plot.surv_obj.Rd
man/distributions.Rd
man/summary.run_model.Rd
man/get_parameter_names.Rd
man/define_calibration_fn.Rd
man/create_matrix_from_tabular.Rd
man/insert.Rd
man/look_up.Rd
man/reexports.Rd
man/get_state_value_names.Rd
man/plur.Rd
man/clean_factors.Rd
man/plot.run_model.Rd
man/eval_strategy.Rd
man/define_init.Rd
man/join.Rd
man/probability.Rd
man/define_dsa.Rd
man/extract_params.Rd
man/create_demographic_table.Rd
man/part_survs_from_surv_inputs.Rd
man/set_covariates.Rd
man/define_state.Rd
man/dispatch_strategy_hack.Rd
man/compute_counts.Rd
man/get_matrix_order.Rd
man/discount_hack.Rd
man/eval_strategy_newdata.Rd
man/define_inflow.Rd
man/apply_af.Rd
man/plot.psa.Rd
man/compute_surv.Rd
man/create_parameters_from_tabular.Rd
man/rescale_discount_rate.Rd
man/eval_surv.Rd
man/create_model_from_tabular.Rd
man/define_strategy.Rd
man/parse_multi_spec.Rd
man/run_dsa.Rd
man/get_state_number.Rd
man/add_hazards.Rd
man/define_parameters.Rd
man/update_model.Rd
man/extract_strata.Rd
man/get_transition.Rd
man/calc_surv_from_prob.Rd
man/make_names.Rd
man/dispatch_strategy.Rd
man/extract_stratum.Rd
man/calc_prob_from_surv.Rd
man/check_strategy_index.Rd
man/list_all_same.Rd
heemod documentation built on May 20, 2017, 4:42 a.m.