Files in heemod

Markov Models for Health Economic Evaluations

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/sysdata.rda

R/resamp_define.R R/look_up.R R/resamp_print.R R/gho_mortality.R R/matrix_eval.R R/param_print.R R/matrix_define.R R/cluster.R R/part_surv.R R/theme_ggplot.R R/expand.R R/evpi.R R/tabular_input.R R/param_eval.R R/combine.R R/transform.R R/resamp_eval.R R/survival_eval.R R/density.R R/states_eval.R R/strategy_print.R R/sensitivity_print.R R/sensitivity_eval.R R/states_print.R R/update.R R/acceptability_curve.R R/correct_counts.R R/sensitivity_define.R R/efficiency_frontier.R R/strategy_eval.R R/survival_define.R R/run_model_define.R R/run_model_summary.R R/survival_operations.R R/zzz.R R/heemod.R R/covariance.R R/strategy_define.R R/newdata.R R/calibration.R R/utils.R R/param_define.R R/dispatch_strategy.R R/matrix_plot.R R/states_define.R

inst/CITATION

inst/doc/a_introduction.R inst/doc/f_sensitivity.Rmd inst/doc/b_time_dependency.Rmd

inst/doc/i_reproduction.html

inst/doc/i_reproduction.Rmd

inst/doc/e_probabilistic.html

inst/doc/e_probabilistic.R

inst/doc/d_non_homogeneous.html

inst/doc/j_survival.html

inst/doc/a_introduction.Rmd

inst/doc/a_introduction.html

inst/doc/k_calibration.R

inst/doc/c_homogeneous.html

inst/doc/h_tabular.html

inst/doc/k_calibration.Rmd inst/doc/g_heterogeneity.R inst/doc/i_reproduction.R inst/doc/c_homogeneous.Rmd inst/doc/h_tabular.Rmd

inst/doc/b_time_dependency.html

inst/doc/e_probabilistic.Rmd inst/doc/h_tabular.R inst/doc/d_non_homogeneous.Rmd

inst/doc/f_sensitivity.html

inst/doc/k_calibration.html

inst/doc/c_homogeneous.R inst/doc/j_survival.Rmd inst/doc/g_heterogeneity.Rmd inst/doc/j_survival.R

inst/doc/g_heterogeneity.html

inst/doc/f_sensitivity.R inst/doc/b_time_dependency.R inst/doc/d_non_homogeneous.R inst/examples/example_plot.run_model.R inst/examples/example_look_up.R inst/examples/example_define_calibration_fn.R inst/examples/example_run_dsa.R inst/examples/example_update.R inst/examples/example_run_model.R inst/examples/example_define_parameters.R inst/examples/example_define_strategy.R inst/examples/example_calibration.R inst/examples/example_define_resample.R inst/examples/example_define_transition.R inst/examples/example_eval_strategy.R inst/examples/example_eval_strategy_newdata.R inst/examples/example_run_psa.R inst/examples/example_eval_parameters.R inst/examples/example_transform.R inst/examples/example_define_state.R

inst/tabular/surv/use_fits.csv

inst/tabular/surv/example_oncOptions.csv

inst/tabular/surv/example_oncSpecs_mixed.csv

inst/tabular/surv/use_fits_mixed.csv

inst/tabular/surv/example_use_fits_explicit_dists.csv

inst/tabular/surv/example_oncSpecs_nomatrix.csv

inst/tabular/surv/use_fits_join.csv

inst/tabular/surv/survival_info.csv

inst/tabular/surv/example_oncParams_nomatrix.csv

inst/tabular/surv/survival_info_eventcode_error.csv

inst/tabular/surv/surv_def_ok.csv

inst/tabular/surv/surv_table.csv

inst/tabular/surv/example_oncSpecs_explicit_dists.csv

inst/tabular/surv/example_oncParams_explicit_dists.csv

inst/tabular/surv/example_oncStates.csv

inst/tabular/surv/survival_info_eventcode.csv

inst/tabular/surv/survival_info_explicit_dists.csv

inst/tabular/surv/set_definitions_1.csv

inst/tabular/surv/example_oncSpecs_nomatrix_run.csv

inst/tabular/surv/example_oncSpecs_test_part_surv.csv

inst/tabular/surv/set_definitions_error_1.csv

inst/tabular/surv/example_oncSpecs_nomatrix_join.csv

inst/tabular/surv/fake_fit_tib.csv

inst/tabular/surv/survival_info_nomatrix_run.csv

inst/tabular/surv/set_definitions_2.csv

inst/tabular/surv/example_oncParams.csv

inst/tabular/surv/example_oncTransitionProbs.csv

inst/tabular/surv/use_fits_example0.csv

inst/tabular/surv/example_oncSpecs.csv

inst/tabular/surv/survival_data/OS.B.surv.fits.RData

inst/tabular/surv/survival_data/PFS.A.surv.fits.RData

inst/tabular/surv/survival_data/OS.A.surv.fits.RData

inst/tabular/surv/survival_data/set_definitions.csv

inst/tabular/surv/survival_data/surv_data_OS.csv

inst/tabular/surv/survival_data/set_def_pfs_os.csv

inst/tabular/surv/survival_data/surv_data_OS_eventcode.csv

inst/tabular/surv/survival_data/surv_data_PFS.csv

inst/tabular/surv/survival_data/surv_data_PFS_eventcode.csv

inst/tabular/surv/survival_data/PFS.B.surv.fits.RData

inst/tabular/test/testing_XLSX_file_with_comment_col.xlsx

inst/tabular/test/REFERENCE_1probmissing.csv

inst/tabular/test/wrong_ext.tab

inst/tabular/test/THR_test_states.csv

inst/tabular/test/testing_XLS_file_with_comment_col.xls

inst/tabular/test/survival_spec_error_2.csv

inst/tabular/test/testing_CSV_file_with_comment_col.csv

inst/tabular/test/REFERENCE_missingfunctions.csv

inst/tabular/test/example_multinom_params_dup_name.csv

inst/tabular/test/THR_test_transition_probs.csv

inst/tabular/test/toedit_REFERENCE.csv

inst/tabular/test/survival_spec_error_1.csv

inst/tabular/test/THR_test_transition_probs_1missing.csv

inst/tabular/test/THR_test_transition_probs_bad.csv

inst/tabular/test/example_multinom_params.csv

inst/tabular/test/survival_spec_1.csv

inst/tabular/test/THR_parameters.csv

inst/tabular/test/THR_test_transition_probs_2.csv

inst/tabular/test/THR_options.csv

inst/tabular/test/survival_spec_2.csv

inst/tabular/test/bad_REFERENCE.csv

inst/tabular/test/test_no_output_dir/THR_states.csv

inst/tabular/test/test_no_output_dir/THR_transition_probs.csv

inst/tabular/test/test_no_output_dir/REFERENCE.csv

inst/tabular/test/test_no_output_dir/THR_demographic_table.csv

inst/tabular/test/test_no_output_dir/THR_parameters.csv

inst/tabular/test/test_no_output_dir/THR_options.csv

inst/tabular/test/test_no_output_dir/input_dataframes/mr_table.xlsx

inst/tabular/test/test_no_overwrite/THR_states.csv

inst/tabular/test/test_no_overwrite/THR_transition_probs.csv

inst/tabular/test/test_no_overwrite/REFERENCE.csv

inst/tabular/test/test_no_overwrite/THR_demographic_table.csv

inst/tabular/test/test_no_overwrite/THR_parameters.csv

inst/tabular/test/test_no_overwrite/THR_options.csv

inst/tabular/test/test_no_overwrite/input_dataframes/mr_table.xlsx

inst/tabular/test/test_no_overwrite/output/state_count_plot_standard.png

inst/tabular/test/test_diff_mod_name/THR_states.csv

inst/tabular/test/test_diff_mod_name/THR_transition_probs.csv

inst/tabular/test/test_diff_mod_name/REFERENCE.csv

inst/tabular/thr/THR_states.csv

inst/tabular/thr/THR_options_2core.csv

inst/tabular/thr/THR_transition_probs.csv

inst/tabular/thr/REFERENCE.csv

inst/tabular/thr/THR_demographic_table.csv

inst/tabular/thr/THR_parameters.csv

inst/tabular/thr/THR_options.csv

inst/tabular/thr/REFERENCE_2core.csv

inst/tabular/thr/input_dataframes/mr_table.xlsx

inst/tabular/thr/output/dsa_diff.png

inst/tabular/thr/output/dsa.png

inst/tabular/thr/output/state_count_plot.pdf

inst/tabular/thr/output/state_counts.csv

inst/tabular/thr/output/cycle_values.csv

inst/tabular/thr/output/dsa.pdf inst/tabular/thr/output/psa.pdf

inst/tabular/thr/output/psa.png

inst/tabular/thr/output/dsa_diff.pdf

inst/tabular/thr/output/psa_values.csv

inst/tabular/thr/output/icer_by_group.csv

inst/tabular/thr/output/acceptability.png

inst/tabular/thr/output/state_count_plot.png

inst/tabular/thr/output/dsa.csv

inst/tabular/thr/output/acceptability.pdf

inst/media/logo.png

build/vignette.rds

tests/testthat.R tests/testthat/test_tabular_input.R tests/testthat/test_run_model.R tests/testthat/test_calibration.R tests/testthat/test_surv_eval.R tests/testthat/test_dmhee.R tests/testthat/test_sensitivity.R tests/testthat/test_transform.R tests/testthat/test_part_surv.R tests/testthat/test_heterogeneity.R tests/testthat/test_parameters.R tests/testthat/test_look_up.R tests/testthat/test_check_init.R tests/testthat/test_probabilistic.R tests/testthat/Rplots.pdf tests/testthat/test_parallel.R tests/testthat/test_matrix.R tests/testthat/test_expand.R tests/testthat/test_model.R tests/testthat/test_efficiency_frontier.R tests/testthat/setup.R tests/testthat/test_starting_values.R tests/testthat/test_states.R vignettes/f_sensitivity.Rmd vignettes/b_time_dependency.Rmd vignettes/i_reproduction.Rmd vignettes/a_introduction.Rmd vignettes/k_calibration.Rmd vignettes/c_homogeneous.Rmd vignettes/h_tabular.Rmd vignettes/e_probabilistic.Rmd vignettes/d_non_homogeneous.Rmd vignettes/j_survival.Rmd vignettes/g_heterogeneity.Rmd man/summary.surv_shift.Rd man/create_states_from_tabular.Rd man/compute_icer.Rd man/load_surv_models.Rd man/check_names.Rd man/apply_hr.Rd man/safe_conversion.Rd man/calc_surv_from_prob.Rd man/run_psa.Rd man/cluster.Rd man/wtd_summary.Rd man/heemod.Rd man/get_state_names.Rd man/part_survs_from_surv_inputs.Rd man/get_counts_diff.Rd man/define_calibration_fn.Rd man/create_parameters_from_tabular.Rd man/acceptability_curve.Rd man/clean_factors.Rd man/who_mortality.Rd man/reexports.Rd man/calc_prob_from_surv.Rd man/check_strategy_index.Rd man/look_up.Rd man/calibrate_model.Rd man/eval_strategy.Rd man/define_state_list.Rd man/define_state.Rd man/join.Rd man/summary.run_model.Rd man/filter_blanks.Rd man/apply_af.Rd man/define_parameters.Rd man/combine_models.Rd man/eval_strategy_newdata.Rd man/get_state_value_names.Rd man/expand_state.Rd man/compute_surv.Rd man/eval_transition.Rd man/set_covariates.Rd man/run_dsa.Rd man/is.wholenumber.Rd man/rescale_discount_rate.Rd man/plur.Rd man/as_expr_list.Rd man/plot.surv_obj.Rd man/combine_probs.Rd man/eval_models_from_tabular.Rd man/eval_resample.Rd man/add_hazards.Rd man/plot.psa.Rd man/define_strategy.Rd man/define_surv_table.Rd man/extract_stratum.Rd man/parse_multi_spec.Rd man/get_parameter_names.Rd man/check_cycle_inputs.Rd man/define_inflow.Rd man/create_demographic_table.Rd man/compute_counts.Rd man/create_model_list_from_tabular.Rd man/eval_state_list.Rd man/plot.dsa.Rd man/define_survival.Rd man/reindent_transition.Rd man/apply_shift.Rd man/check_states.Rd man/file-checkers.Rd man/distributions.Rd man/probability.Rd man/get_frontier.Rd man/define_starting_values.Rd man/run_model.Rd man/discount_hack.Rd man/get_values.Rd man/define_part_surv.Rd man/get_state_number.Rd man/define_transition.Rd man/gather_model_info.Rd man/read_file.Rd man/create_df_from_tabular.Rd man/eval_surv.Rd man/dispatch_strategy.Rd man/create_model_from_tabular.Rd man/define_dsa.Rd man/dispatch_strategy_hack.Rd man/check_matrix.Rd man/create_matrix_from_tabular.Rd man/discount.Rd man/eval_parameters.Rd man/list_all_same.Rd man/mix.Rd man/insert.Rd man/compute_values.Rd man/export_savi.Rd man/run_model_tabular.Rd man/modify.Rd man/define_spline_survival.Rd man/define_init.Rd man/get_mat_total.Rd man/get_matrix_order.Rd man/get_counts.Rd man/extract_strata.Rd man/define_correlation.Rd man/heemod_scale.Rd man/create_options_from_tabular.Rd man/extract_params.Rd man/run_bcea.Rd man/make_names.Rd man/project_fn.Rd man/save_outputs.Rd man/apply_or.Rd man/get_transition.Rd man/construct_part_surv_tib.Rd man/expand_if_necessary.Rd man/update_model.Rd man/define_psa.Rd man/plot.run_model.Rd man/interpolate.Rd

heemod documentation built on July 26, 2023, 5:45 p.m.