CleanAllele: Clean messy HLA typing data

In hlaR: Tools for HLA Data

Clean messy HLA typing data

Description

This function takes raw messy HLA(Human Leukocyte Antigen) typing data as input. It removes inconsistent formatting and unnecessary symbols. If one of two alleles at a loci is NA, the locus is assumed to be homozygous.

Usage

CleanAllele(var_1, var_2)

Arguments

var_1	HLA on allele 1.
var_2	HLA on allele 2.

Value

A data frame with 4 columns: - 'var_1': raw messy input hla, identical with first input - 'var_2': raw messy input hla, identical with second input - 'locus1_clean': cleaned hla of var_1 - 'locus2_clean': cleaned hla of var_2

Examples

dat <-  read.csv(system.file("extdata/example", "HLA_Clean_test.csv", package = "hlaR"))
re <- CleanAllele(dat$recipient_a1, dat$recipient_a2)

hlaR documentation built on Feb. 16, 2023, 7:04 p.m.