CountAlleleMism: Count HLA mismatch at the allele level

In hlaR: Tools for HLA Data

Count HLA mismatch at the allele level

Description

Donor and recipient HLA(Human Leukocyte Antigen) typing data is compared to determine allele level mismatch. The output of EvalAlleleMism is used as input for this function. Allele level mismatch can be calculated for both high and low resolution data. The generated count will return NA if the input alleles are NA.

Usage

CountAlleleMism(dat_in, names_in)

Arguments

dat_in	A data frame with donor and recipient mismatched alleles. It's a output from EvalAlleleMism function.
names_in	A vector of HLA loci name to count mismatch for.

Value

A tibble of input data (subject id and hla loci) followed by mismatch hla count of each subject.

Examples

hla <- read.csv(system.file("extdata/example", "HLA_MisMatch_count_test.csv", package = "hlaR"))
classI <- CountAlleleMism(hla, c("mism.a1", "mism.a2", "mism.b1", "mism.b2"))
classII <- CountAlleleMism(hla, c("mism.dqa12", "mism.dqb11", "mism.dqb12"))

hlaR documentation built on Feb. 16, 2023, 7:04 p.m.