ImputeHaplo: Imputation
In hlaR: Tools for HLA Data
View source: R/allele-haplotype.R
ImputeHaplo R Documentation
Imputation
Description
Impute low or mixed resolution HLA(Human Leukocyte Antigen) typing to the most likely high resolution equivalent. Imputation is computationally intensive, so large dataset may encounter delays in processing. This function uses data from the NMDP(National Marrow Donor Program), and is currently limited to HLA A, B, C, and DRB loci.
Usage
ImputeHaplo(dat_in)
Arguments
dat_in
A data frame with low resolution HLA data.
Value
A data frame with high resolution HLA data pulled from the most likely pair of haplotypes matching the input low resolution data.
Examples
dat <- read.csv(system.file("extdata/example", "Haplotype_test.csv", package = "hlaR"))
result <- ImputeHaplo(dat_in = dat[c(1:2), ])
hlaR documentation built on Feb. 16, 2023, 7:04 p.m.
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View source: R/allele-haplotype.R
| ImputeHaplo | R Documentation |
Imputation
Description
Impute low or mixed resolution HLA(Human Leukocyte Antigen) typing to the most likely high resolution equivalent. Imputation is computationally intensive, so large dataset may encounter delays in processing. This function uses data from the NMDP(National Marrow Donor Program), and is currently limited to HLA A, B, C, and DRB loci.
Usage
ImputeHaplo(dat_in)
Arguments
dat_in |
A data frame with low resolution HLA data. |
Value
A data frame with high resolution HLA data pulled from the most likely pair of haplotypes matching the input low resolution data.
Examples
dat <- read.csv(system.file("extdata/example", "Haplotype_test.csv", package = "hlaR"))
result <- ImputeHaplo(dat_in = dat[c(1:2), ])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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