Description Usage Arguments Value Examples
Invert a ranged object Select the empty space between ranges for the whole genome, for instance you may want to overlap with everything NOT in a set of ranges.
1 2 | invGRanges(X, inclusive = FALSE, build = NULL,
pad.missing.autosomes = TRUE)
|
X |
a ranged object, GRanges, RangedData or ChipInfo |
inclusive |
logical, TRUE if the ends of ranges should be in the inverted object |
build |
character, "hg18" or "hg19" (or 36/37) to show which reference to retrieve. The default when build is NULL is to use the build from the current ChipInfo annotation |
pad.missing.autosomes |
logical, whether to add entire chromosomes to the inverted range object when they are not contained within X |
a ranged object of the same type as X, but with the inverse set of human genomic ranges selected
1 2 3 4 | X <- rranges()
invGRanges(X,inclusive=TRUE)
invGRanges(X)
invGRanges(X,pad.missing.autosomes=FALSE)
|
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