ranged.to.txt: Convert GRanges/RangedData to chr:pos1-pos2 vector
In humarray: Simplify Analysis and Annotation of Human Microarray Datasets
Description
Usage
Arguments
Value
See Also
Examples
Description
Takes a RangedData or GRanged object from some annotation lookup functions and converts to standard text
positions, such as what you might see on the UCSC genome browser, such as
chr1:10,000,234-11,000,567 for a range, or chrX:234,432 for a SNP. Useful for printing
messages, concatenating positions to a single vector, or creating queries for databastes.
Usage
1
ranged.to.txt(ranges)
Arguments
ranges
A RangedData or GRanges object
Value
a text vector of the same length as 'ranges' with notation as described above
representing each position in the 'ranges' object
See Also
Examples
1
humarray documentation built on Nov. 20, 2017, 1:05 a.m.
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Description Usage Arguments Value See Also Examples
Description
Takes a RangedData or GRanged object from some annotation lookup functions and converts to standard text positions, such as what you might see on the UCSC genome browser, such as chr1:10,000,234-11,000,567 for a range, or chrX:234,432 for a SNP. Useful for printing messages, concatenating positions to a single vector, or creating queries for databastes.
Usage
1 | ranged.to.txt(ranges)
|
Arguments
ranges |
A RangedData or GRanges object |
Value
a text vector of the same length as 'ranges' with notation as described above representing each position in the 'ranges' object
See Also
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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