Description Usage Arguments Details Value Note Author(s) See Also Examples

Uses numerical techniques for calculating the normalizing constant for the hyperdirichlet distribution

1 2 3 4 5 6 7 8 |

`x` |
Object of class “hyperdirichlet” (or coerced thereto) |

`powers` |
Vector of length |

`irregardless` |
Boolean; see details section |

`disallowed` |
Function specifying a subset of the simplex
over which to integrate; default |

`give` |
Boolean, with default |

`...` |
Further arguments passed to |

Function

`B()`

is the user-friendly version. It accesses the`NC`

slot. If not`NA`

, the value is returned; if`NA`

, the normalizing constant is calculated using`adaptIntegrate()`

of the`cubature()`

package, via`calculate_B()`

.Function

`NC()`

is not intended for the user. It is used internally as an accessor method for the`NC`

slot, and this value is returned indiscriminately.Function

`calculate_B()`

is the engine which actually does the work. Observe how*p*is converted to`e`

(by`e_to_p()`

) and the integral proceeds over a hypercube. Function`dirichlet()`

and`gd()`

do not use this as the normalizing constant has an analytical expression and this is used instead.Function

`probability()`

gives the probability of an observation from a hyperdirichlet distribution satisfying`!disallowed(p)`

.Function

`mgf()`

is the moment generating function, taking an argument that specifies the powers of`p`

needed: the expectation of*prod p^powers*is returned.Function

`mean()`

returns the mean value of the hyperdirichlet distribution. This is computationally slow (consider`maximum_likelihood()`

for a measure of central tendency). The function takes a`normalize`

argument, not passed to`adaptIntegrate()`

: this is Boolean with`FALSE`

meaning to return the value found by integration directly, and default`TRUE`

meaning to normalize so the sum is exactly 1Function

`is.proper()`

checks a hyperdirichlet distribution for being normalizable: a “proper” hyperdirichlet object has a finite integral and therefore can be normalized. This function is quite time-consuming for hyperdirichlet distributions of large dimension.The

`irregardless`

argument to function`is.proper()`

is Boolean, with`TRUE`

meaning to carry out the checks whatever the value of slot`@validated`

[that is,`validated(x)`

]. Default`FALSE`

means that function`is.proper()`

returns`TRUE`

if`@validated`

is`TRUE`

and to carry out the check otherwise. Use this argument to force`is.proper()`

to carry out a check even if not strictly necessary.Function

`validated()`

is an accessor method for the`@validated`

slot of hyperdirichlet object. It returns a Boolean variable with`TRUE`

meaning that the object is**known**to be “proper” (ie`is.proper(x)`

returns`TRUE`

), so it is normalizable, even if the normalization constant is not known. This flag is present because many hyperdirichlet objects of interest are known*a priori*to be proper, so executing`is.proper()`

would be unnecessary.

Functions `B()`

, `NC()`

, `calculate_NC()`

notionally
return a scalar: the normalization constant

Functions `mean()`

and `mgf()`

return a *k*-tuple

Functions `is.proper()`

and `validated()`

return a Boolean

Function `probability()`

returns a scalar, a probability.

The adapt package is no longer available on CRAN; from 1.4-3, the
package uses `adaptIntegrate`

of the cubature package.

Robin K. S. Hankin

1 2 3 4 5 6 7 8 9 10 | ```
a <- hyperdirichlet(c(4,3,6,5,4,3,2,1))
## Not run:
B(a) # Not recommended
a <- as.hyperdirichlet(a,TRUE) # Recommended
is.proper(a)
mgf(a,powers=1:3) # expectation of p1^1 * p2^2 * p3^3
## End(Not run)
``` |

hyperdirichlet documentation built on May 31, 2017, 5:18 a.m.

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