Description Usage Arguments Value Author(s) Examples
Select the subset of records in iRefIndex belonging to a certain interaction type (binary, polymer, complex).
1 2 | select_interaction_type(int_type, MITAB_table)
|
int_type |
Interaction type ("binary", "complex" or "polymer"). |
MITAB_table |
iRefIndex/MITAB R table. |
output |
R Table containing the requested subset of iRefIndex. |
Antonio Mora <antoniocmora@gmail.com>
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ## get tables
irefindex_curr_ecoli = get_irefindex("562", "13.0", tempdir())
## execute function
iRef_binary = select_interaction_type("binary", irefindex_curr_ecoli)
iRef_complex = select_interaction_type("complex", irefindex_curr_ecoli)
iRef_polymer = select_interaction_type("polymer", irefindex_curr_ecoli)
## get results
#pie_int_type = pie(c(dim(iRef_binary)[1], dim(iRef_polymer)[1], dim(
#iRef_complex)[1]), labels=c("Binaries","Polymers","Complexes"), main=
#"iRefIndex Records per Interaction Type")
#edit(iRef_complex[1:10,])
|
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