Description Usage Arguments Value Author(s) Examples
Get information on interactors and complexes, for a given protein.
1 2 | summary_protein(id_type, id_value, MITAB_table)
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id_type |
Protein Identifier type ("irogid" for iRefIndex's protein iROG ID; "icrogid" for the canonical version of the iRefIndex's protein iROG ID). |
id_value |
Value of the iROG or icROG to summarize. |
MITAB_table |
MITAB/iRefIndex R table. |
output |
R list containing: Number of interactions per interaction type, interactors in binary interactions, interactors in complex interactions and interactors in polymer interactions. |
Antonio Mora <antoniocmora@gmail.com>
1 2 3 4 5 6 7 8 9 10 11 12 | ## Not run:
## get tables
irefindex_80_mouse = get_irefindex("10090", "8.0", tempdir())
## execute function
output_1 = summary_protein("irogid", "4374882", irefindex_80_mouse)
output_2 = summary_protein("icrogid", "4374882", irefindex_80_mouse)
output_3 = summary_protein("icrogid", "2892004", irefindex_80_mouse)
output_4 = summary_protein("icrogid", "1365685", irefindex_80_mouse)
## End(Not run)
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