summary_protein: Get Summary Information for a given Protein

In iRefR: iRefIndex Manager

Description

Get information on interactors and complexes, for a given protein.

Usage

     summary_protein(id_type, id_value, MITAB_table)
     

Arguments

id_type	Protein Identifier type ("irogid" for iRefIndex's protein iROG ID; "icrogid" for the canonical version of the iRefIndex's protein iROG ID).
id_value	Value of the iROG or icROG to summarize.
MITAB_table	MITAB/iRefIndex R table.

Value

output

R list containing: Number of interactions per interaction type, interactors in binary interactions, interactors in complex interactions and interactors in polymer interactions.

Author(s)

Antonio Mora <[e-mail]>

Examples

     ## Not run: 
     ## get tables
     irefindex_80_mouse = get_irefindex("10090", "8.0", tempdir())

     ## execute function
     output_1 = summary_protein("irogid", "4374882", irefindex_80_mouse)
     output_2 = summary_protein("icrogid", "4374882", irefindex_80_mouse)
     output_3 = summary_protein("icrogid", "2892004", irefindex_80_mouse)
     output_4 = summary_protein("icrogid", "1365685", irefindex_80_mouse)
     
## End(Not run)
     

iRefR documentation built on May 2, 2019, 9:27 a.m.