summary_protein: Get Summary Information for a given Protein

Description Usage Arguments Value Author(s) Examples

Description

Get information on interactors and complexes, for a given protein.

Usage

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     summary_protein(id_type, id_value, MITAB_table)
     

Arguments

id_type

Protein Identifier type ("irogid" for iRefIndex's protein iROG ID; "icrogid" for the canonical version of the iRefIndex's protein iROG ID).

id_value

Value of the iROG or icROG to summarize.

MITAB_table

MITAB/iRefIndex R table.

Value

output

R list containing: Number of interactions per interaction type, interactors in binary interactions, interactors in complex interactions and interactors in polymer interactions.

Author(s)

Antonio Mora <antoniocmora@gmail.com>

Examples

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     ## Not run: 
     ## get tables
     irefindex_80_mouse = get_irefindex("10090", "8.0", tempdir())

     ## execute function
     output_1 = summary_protein("irogid", "4374882", irefindex_80_mouse)
     output_2 = summary_protein("icrogid", "4374882", irefindex_80_mouse)
     output_3 = summary_protein("icrogid", "2892004", irefindex_80_mouse)
     output_4 = summary_protein("icrogid", "1365685", irefindex_80_mouse)
     
## End(Not run)
     

iRefR documentation built on May 2, 2019, 9:27 a.m.

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