Description Usage Arguments Value Author(s) Examples
Get statistical information about some of the columns of a given iRefIndex/MITAB table.
1 2 | summary_table(MITAB_table)
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MITAB_table |
MITAB/iRefIndex R table to summarize. |
output |
R list containing: Number of non-canonical interactions, number of canonical interactions, number of non-canonical proteins, number of canonical proteins, number of publications, number of experimental methods, distribution of source databases, distribution of interaction types, distribution of number of participants. |
Antonio Mora <antoniocmora@gmail.com>
1 2 3 4 5 6 7 8 9 10 11 12 | ## get tables
irefindex_13_ecoli = get_irefindex("562", "13.0", tempdir())
## execute function
general_ecoli_statistics = summary_table(irefindex_13_ecoli)
intact_statistics = summary_table(select_database("intact", irefindex_13_ecoli,
"this_database"))
complexes_statistics = summary_table(select_interaction_type("complex",
irefindex_13_ecoli))
low_thruput_statistics = summary_table(select_confidence("lpr", c(1,2),
irefindex_13_ecoli))
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