ifcb_get_runtime: Read IFCB Header File and Extract Runtime Information

In iRfcb: Tools for Managing Imaging FlowCytobot (IFCB) Data

Read IFCB Header File and Extract Runtime Information

Description

This function imports an IFCB header file (either from a local path or URL), extracts specific target values such as runtime and inhibittime, and returns them in a structured format (in seconds). This is the R equivalent function of IFCBxxx_readhdr from the ifcb-analysis repository (Sosik and Olson 2007).

Usage

ifcb_get_runtime(hdr_file)

Arguments

hdr_file

A character string specifying the full path to the .hdr file or URL.

Value

A list (hdr) containing runtime, inhibittime, and runType (if available) extracted from the header file.

References

Sosik, H. M. and Olson, R. J. (2007), Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry. Limnol. Oceanogr: Methods 5, 204–216.

See Also

https://github.com/hsosik/ifcb-analysis

Examples

## Not run: 
# Example: Read and extract information from an IFCB header file
hdr_info <- ifcb_get_runtime("path/to/IFCB_hdr_file.hdr")

print(hdr_info)

## End(Not run)

iRfcb documentation built on April 16, 2025, 1:09 a.m.