API for iRfcb
Tools for Managing Imaging FlowCytobot (IFCB) Data
| Global functions | |
|---|---|
| .decode_char | Source code |
| .decode_numeric | Source code |
| .inflate_incremental | Source code |
| .mat_array_flags | Source code |
| .mat_c_time | Source code |
| .mat_cell_array | Source code |
| .mat_char_matrix | Source code |
| .mat_compress_element | Source code |
| .mat_data_type_to_class | Source code |
| .mat_dims | Source code |
| .mat_element | Source code |
| .mat_header | Source code |
| .mat_name | Source code |
| .mat_numeric_codec | Source code |
| .mat_numeric_matrix | Source code |
| .mat_widen_numeric | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .parse_matrix_body | Source code |
| .raw_32vec_from_double | Source code |
| .raw_dbl | Source code |
| .raw_i32vec | Source code |
| .raw_u16 | Source code |
| .raw_u16vec | Source code |
| .raw_u32 | Source code |
| .read_element | Source code |
| .u32_from_raw | Source code |
| adc_get_roi_columns | Source code |
| adc_get_runtime | Source code |
| check_carbon_conversion | Source code |
| check_python_and_module | Source code |
| class_csv_missing_columns | Source code |
| create_package_manifest | Man page Source code |
| defunct | Man page |
| drop_invalid_class_csv | Source code |
| extract_aphia_id | Source code |
| extract_class | Source code |
| extract_features | Source code |
| extract_parts | Source code |
| find_matching_data | Source code |
| find_matching_features | Source code |
| get_latest_github_release | Source code |
| gradio_classify_png | Source code |
| gradio_fetch | Source code |
| gradio_get_thresholds | Source code |
| gradio_parse_predictions | Source code |
| gradio_parse_sse | Source code |
| gradio_parse_sse_json | Source code |
| gradio_predict | Source code |
| gradio_predict_scores | Source code |
| gradio_upload_file | Source code |
| hdr_chr | Source code |
| hdr_int | Source code |
| hdr_num | Source code |
| iRfcb | Man page |
| iRfcb-package | Man page |
| ifcb_adjust_classes | Man page Source code |
| ifcb_annotate_batch | Man page Source code |
| ifcb_annotate_samples | Man page Source code |
| ifcb_classify_images | Man page Source code |
| ifcb_classify_models | Man page Source code |
| ifcb_classify_sample | Man page Source code |
| ifcb_convert_filenames | Man page Source code |
| ifcb_correct_annotation | Man page Source code |
| ifcb_count_mat_annotations | Man page Source code |
| ifcb_create_class2use | Man page Source code |
| ifcb_create_empty_manual_file | Man page Source code |
| ifcb_create_manifest | Man page Source code |
| ifcb_create_manual_file | Man page Source code |
| ifcb_download_dashboard_data | Man page Source code |
| ifcb_download_dashboard_metadata | Man page Source code |
| ifcb_download_test_data | Man page Source code |
| ifcb_download_whoi_plankton | Man page Source code |
| ifcb_extract_annotated_images | Man page Source code |
| ifcb_extract_biovolumes | Man page Source code |
| ifcb_extract_classified_images | Man page Source code |
| ifcb_extract_features | Man page Source code |
| ifcb_extract_pngs | Man page Source code |
| ifcb_features_constraints | Source code |
| ifcb_get_ecotaxa_example | Man page Source code |
| ifcb_get_ferrybox_data | Man page Source code |
| ifcb_get_mat_names | Man page Source code |
| ifcb_get_mat_variable | Man page Source code |
| ifcb_get_runtime | Man page Source code |
| ifcb_get_shark_colnames | Man page Source code |
| ifcb_get_shark_example | Man page Source code |
| ifcb_get_svea_position | Source code |
| ifcb_get_trophic_type | Man page Source code |
| ifcb_is_diatom | Man page Source code |
| ifcb_is_in_basin | Man page Source code |
| ifcb_is_near_land | Man page Source code |
| ifcb_list_dashboard_bins | Man page Source code |
| ifcb_match_taxa_names | Man page Source code |
| ifcb_merge_manual | Man page Source code |
| ifcb_prepare_whoi_plankton | Man page Source code |
| ifcb_psd | Man page Source code |
| ifcb_psd_plot | Man page Source code |
| ifcb_py_install | Man page Source code |
| ifcb_qc_sample | Man page Source code |
| ifcb_read_features | Man page Source code |
| ifcb_read_hdr_data | Man page Source code |
| ifcb_read_mat | Man page Source code |
| ifcb_read_summary | Man page Source code |
| ifcb_replace_mat_values | Man page Source code |
| ifcb_run_image_gallery | Man page Source code |
| ifcb_save_classification | Man page Source code |
| ifcb_summarize_biovolumes | Man page Source code |
| ifcb_summarize_cell_counts | Man page Source code |
| ifcb_summarize_class_counts | Man page Source code |
| ifcb_summarize_png_counts | Man page Source code |
| ifcb_summarize_png_data | Source code |
| ifcb_summarize_png_metadata | Man page Source code |
| ifcb_volume_analyzed | Man page Source code |
| ifcb_volume_analyzed_from_adc | Man page Source code |
| ifcb_which_basin | Man page Source code |
| ifcb_zip_images_by_class | Man page Source code |
| ifcb_zip_matlab | Man page Source code |
| ifcb_zip_pngs | Man page Source code |
| install_missing_packages | Source code |
| mat_var_cell | Source code |
| mat_var_char | Source code |
| mat_var_double | Source code |
| mat_var_numeric | Source code |
| mat_var_uint16 | Source code |
| process_ifcb_string | Man page Source code |
| qc_one_sample | Source code |
| read_adc_columns | Source code |
| read_class_file | Source code |
| read_hdr_file | Man page Source code |
| read_mat | Source code |
| read_mat_v5 | Source code |
| resolve_cell_counts | Source code |
| resolve_ifcb_features_url | Source code |
| resolve_sample_paths | Source code |
| retrieve_worms_records | Man page Source code |
| scale_vol2C_per_cell | Source code |
| scipy_available | Source code |
| split_large_zip | Man page Source code |
| stat_mode | Source code |
| summarize_TBclass | Man page Source code |
| truncate_folder_name | Source code |
| vol2C_diatom | Man page Source code |
| vol2C_diatom_auto | Man page Source code |
| vol2C_lgdiatom | Man page Source code |
| vol2C_nondiatom | Man page Source code |
| write_mat_v5 | Source code |
