summarize_TBclass: Summarize TreeBagger Classifier Results

In iRfcb: Tools for Managing Imaging FlowCytobot (IFCB) Data

Summarize TreeBagger Classifier Results

Description

This function reads a TreeBagger classifier result file (.mat format) and summarizes the number of targets in each class based on the classification scores and thresholds.

Usage

summarize_TBclass(classfile, adhocthresh = NULL)

Arguments

classfile	Character string specifying the path to the TreeBagger classifier result file (.mat format).
adhocthresh	Numeric vector specifying the adhoc thresholds for each class. If NULL (default), no adhoc thresholding is applied. If a single numeric value is provided, it is applied to all classes.

Value

A list containing three elements:

classcount	Numeric vector of counts for each class based on the winning class assignment.
classcount_above_optthresh	Numeric vector of counts for each class above the optimal threshold for maximum accuracy.
classcount_above_adhocthresh	Numeric vector of counts for each class above the specified adhoc thresholds (if provided).

iRfcb documentation built on April 16, 2025, 1:09 a.m.