Nothing
impute.RF=function (tab, conditions,
maxiter = 10, ntree = 100, variablewise = FALSE,
decreasing = FALSE, verbose = FALSE,
mtry = floor(sqrt(ncol(tab))), replace = TRUE,
classwt = NULL, cutoff = NULL, strata = NULL,
sampsize = NULL, nodesize = NULL, maxnodes = NULL,
xtrue = NA, parallelize = c('no', 'variables', 'forests')) {
tab_imp=as.matrix(tab);
new_tab=tab
new_tab.imp=tab_imp
new_conditions=NULL
index=NULL
k=1
for (j in 1:length(levels(conditions))){
index=c(index,which(conditions==levels(conditions)[j]))
nb_rep=sum((conditions==levels(conditions)[j]));
new_tab[,(k:(k+nb_rep-1))]=tab[,which(conditions==levels(conditions)[j])]
new_tab.imp[,(k:(k+nb_rep-1))]=tab_imp[,which(conditions==levels(conditions)[j])]
new_conditions=c(new_conditions,conditions[which(conditions==levels(conditions)[j])])
k=k+nb_rep
}
tab=new_tab
tab_imp=new_tab.imp
conditions=new_conditions
conditions=factor(as.character(conditions),levels=as.character(unique(conditions)));
nb_cond=length(levels(conditions));
nb_rep=rep(0,nb_cond);
k=1;
for (n in 1:nb_cond){
nb_rep[n]=sum((conditions==levels(conditions)[n]));
xincomplete=as.matrix(new_tab[,(k:(k+nb_rep[n]-1))]);
nbna=fast_apply_nb_na(xincomplete,1);
if (sum(nbna)>0){
xincomplete1=xincomplete[which(nbna!=nb_rep[n]),];
nbna2=fast_apply_nb_na(xincomplete1,1);
if (sum(nbna2)>0){
rngseed(1234567);
xcomplete1 <- missForest(xincomplete1,
maxiter = maxiter, ntree = ntree, variablewise = variablewise,
decreasing = decreasing, verbose = verbose,
mtry = mtry, replace = replace,
classwt = classwt, cutoff = cutoff, strata = strata,
sampsize = sampsize, nodesize = nodesize, maxnodes = maxnodes,
xtrue = xtrue, parallelize = parallelize)
tab_imp[which(nbna!=nb_rep[n]),(k:(k+nb_rep[n]-1))]=xcomplete1$ximp;
}
}
k=k+nb_rep[n];
}
tab_imp[,index]=tab_imp
colnames(tab_imp)=colnames(tab)
return(tab_imp)
}
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